HsaINT0041240 @ hg19
Intron Retention
Gene
ENSG00000148204 | CRB2
Description
crumbs homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:18688]
Coordinates
chr9:126128506-126129636:+
Coord C1 exon
chr9:126128506-126128645
Coord A exon
chr9:126128646-126129450
Coord C2 exon
chr9:126129451-126129636
Length
805 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCGCGTGTGTGTGCCCCCAGGCT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTTCCGGTGCGACTGCGCGGGCACCGGCTACGAGGGCACGCACTGCGAGCGGGAGGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAACGCGTCCTGCCTCGAGGGCCTCGGGAGCTTCCGCTGCCTCTGTTGGCCAG
Seq A exon
GTGTGTGCGTGCAGGTGCGCGGCCTGGCGGGGGGAGGGGTAGGTGTGCGCCTGTGCGGCCTGGGGCGGTGGGGCAGGTGTGTGGCTGCACGCGAGTGCCCGCTGGGTCCTCGGGACCAGAGTGTGTGTGTGATTGCAACCTGTCGGAGCCTCAGTTTCCTGATCTACAAAATAGGGCTGATCGTAGCGCCTGCTCCTGGGGTTGCTGCGGGGAGCTCGAAGGTGCGACGCCTGGGAAGCCCTTGGGGAGGGCCTGACAGCTGCAAAGGGCTCAGTAATTAATGCTAGTAATAGTAGTAAGACTAGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATTGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAAGCATGGTGGCATGTACCTGTAGTCCTAGCTACTCAGGAAGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTGAGCAGAGATCATGCCGCTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTATCTCAAAAAAAAAAAAAAAAAATTAGTAGTAAGACTAGTAATAGCAGTAATAGGCCACTGCTGCTGAAGGCTGCCGTGGTCATTCCTGCGGCCCTTAGTGTGTCCCTCCCTCGCCATTCGTGGCTTATTCCGAGCTGCGGTCCCTTGCTGGCCCTCGCTAGCCTGGTCATAGTGAAGAGGTGCTGCCCGGCAACCCCGTGAGACCTGATGTCCGCGTGTGTGTGCCCCCAG
Seq C2 exon
GCTACAGCGGCGAGCTGTGCGAGGTGGACGAGGACGAGTGTGCATCGAGCCCCTGCCAGCATGGGGGCCGATGCCTGCAGCGCTCTGACCCGGCCCTCTACGGGGGTGTCCAGGCCGCCTTCCCTGGCGCCTTCAGCTTCCGCCATGCTGCGGGTTTCCTGTGCCACTGCCCTCCTGGCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204-CRB2:NM_173689:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
NA
C2:
PF0000822=EGF=PD(16.1=7.9),PF126612=hEGF=PU(69.2=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGCTACGAGGGCAC
R:
CCAGGAGGGCAGTGGCAC
Band lengths:
297-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)