BtaINT0043713 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94512052-94513043:+
Coord C1 exon
chr11:94512052-94512191
Coord A exon
chr11:94512192-94512857
Coord C2 exon
chr11:94512858-94513043
Length
666 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCCCATGTGTGTGTCCCTAGGCT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GTTCCGGTGCGACTGCGCGGACACGGGCTACGAGGGCGAGCGCTGCGAGCTGGAGGTTCTGGAGTGCGCGTCGGCGCCCTGCGCGAACAACGCGTCCTGCCTCGAGGGCCTCGGGAGCTTCCGCTGCCTCTGCTGGCCAG
Seq A exon
GTGTGTGGGCATGCGCGCGCGCGCTCCCAGGGGGGCGGGGGCACAGGGTGCGGCGGCCCGGCCTGGGATGCCAGTGCGGGTGTGCGCTGGTGCAGAGTGCGCGCACGTGACTGCAGCTTCTCTGCAGCTTCCCCGATCTGCGAAGCAGGGCTGATCATAGCACTTACCCCTGGGCTGTTGGGAGCCGCTGCTGCTGCCTGCTCGCGCAGTCCTGTCAGACTCTTTGCGATCCCACAGACTGTAGCCTGCCAGGCTCCTCTGTCCGTGGGATTATCAGAATACTGGCGTCCGTTGCCATTTCCTTCTCCAGGGAAACTTTCTCCGGATCCAACCCAGGTCTCCGGCTGGCTTGGCAGGTGGATTCTTTACCACTGAACCACCTGGGAAGCCCGTTGTGAGGAGAGTAAATGCGTAAAGCCCACGAAGCCTTGGCACAGGGCCCTGCAGGAGCAGAGTGCTCAGTGATACTAGAAATAGTAATGATATTAGTCACATGTTGCTGGTGAAGGCGGTCCCGGTCACTCCTGTCCCGTGTGCCCCTGCCTCAGAGTATCTGGATTGGTGTTCTGAGTTGCTGTCCCAGCCTGGCCCTGGTGGGCTGGGCAGCAGTGGAGGAGTGCTGCCTGGTGGCCCCGTGTGACCTGATGCCCATGTGTGTGTCCCTAG
Seq C2 exon
GCTACAGTGGCGAGCGGTGTGAGGTGGATGAGGACGAATGTGCGGTGGGCCCCTGCCAGCATGGGGGCCAGTGCCTGCAGCGCTCGGATCCAACCCTCTATGGGGGCATCCAGGCCACTTTCCCAGATGACTTCAGCTTTCGCCAGGCTGCTGGCTTCGTGTGCCGCTGCCCTCCGGGCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
NA
C2:
PF0000822=EGF=PD(16.1=7.9),PF126612=hEGF=PU(69.2=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGGCGAGCGCTG
R:
CACGAAGCCAGCAGCCTG
Band lengths:
274-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development