GgaINT0126097 @ galGal3
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9706153-9706832:+
Coord C1 exon
chr17:9706153-9706292
Coord A exon
chr17:9706293-9706756
Coord C2 exon
chr17:9706757-9706832
Length
464 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACACAGAGGTCTCCTGGCAGGTT
3' ss Score
2.97
Exon sequences
Seq C1 exon
TTACCAATGTGACTGCAGTGACACAGGCTTTGAAGGGGACCACTGTGAGTTGGATATCCTGGAGTGTGCCTCTGAGCCCTGTCTGAACAATGCCACATGTGTTGAAGGAATCAAGAACTACAGCTGTGCCTGCTGGACAG
Seq A exon
GTAAGTTTGAAATGTATTTTGTATGTCAGCACCCAGGCATACTGCAACAGAGAGCACATGCTGAGTTGCCCTGTTGAAGTAGTAAGGATTTAACGTGGTCCAACGTGAAGTTTTGTTATCCAAAACAATGAGGCTACCGCTGCATCTCCCTTTACCAGTCATCCAGGATCAGATGAACCTCTTTGTTGGGAAATGCACCCTGATCTTCAACCATAAAGTTTCCTTTCTCTTCTTTTCTGCTTTTCCCCGTGTGTGTTTTTCTATCACAAAGTAATAGTTTCTTGCAAATTGGTTATCTAGCTCCCTCCTTTGACGTGCTGGAGAAACTGGAGGACTCTGGGACTCTGTACTCAACGAGTTGCATGTCTTTTGGCTCCTATTCTCATCTTCAAGGCAGCCACAATACCTGGGTGACTTGTTCTAGTGTAGTTGTGCGTGATGCTTACACAGAGGTCTCCTGGCAG
Seq C2 exon
GTTACACAGGGCAGCATTGTGAAGAGGATGTGAACGAGTGTGCGACAGATCCCTGTCACAATGGAGGTGTATGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(41.2=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
NA
C2:
PF0000822=EGF=PD(16.1=19.2),PF0000822=EGF=PU(37.5=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGTGACTGCAGTGACA
R:
AAGCATACACCTCCATTGTGACA
Band lengths:
214-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]