HsaINT0043000 @ hg19
Intron Retention
Gene
ENSG00000168925 | CTRB1
Description
chymotrypsinogen B1 [Source:HGNC Symbol;Acc:2521]
Coordinates
chr16:75257346-75258086:+
Coord C1 exon
chr16:75257346-75257526
Coord A exon
chr16:75257527-75257952
Coord C2 exon
chr16:75257953-75258086
Length
426 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ACCCTCCTCCTGTCCTGCAGCCA
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTCTTCAAGAACCCCAAGTTCAGCATTCTGACCGTGAACAATGACATCACCCTGCTGAAGCTGGCCACACCTGCCCGCTTCTCCCAGACAGTGTCCGCCGTGTGCCTGCCCAGCGCCGACGACGACTTCCCCGCGGGGACACTGTGTGCCACCACAGGCTGGGGCAAGACCAAGTACAACG
Seq A exon
GTGAGGGGCCGCGGGGCTGCCTCTGGGGTCTGGGCTGCCTGGCCGTGGAGTCCCCCCGTGACCGTTTGGCTCTAAATTCCAACACGCTCCTAACTGCCCGTTCGTTATTGAAAATCTTCTGAATTTAAAATCCCCCAAATGCAAATAAAATCCAGGTCGGATCATGAGGAGCCTGCACAGGGAGCTTCTGAGCAGCGCCCGGCCGGGTGAGCCCTGCCCTGGCTGACCTGCCTGGAGTCGCAGCGTGGGGCTCCCACCCGGGCAGGGCCGAGGCCCCCTTGTCCCACAGGCGCTTCTGAGGCTCCAGGGGCCGTACCCAACATCGTGGTGATGGTGCAGGGTAGGGCAGGCGTGTCGGCCCCGGGTCTCTCCCTCCACTCTTGGCTGAGTGAGCCCAGGGGCCCTGACCCTCCTCCTGTCCTGCAG
Seq C2 exon
CCAACAAGACCCCTGACAAGCTGCAGCAGGCAGCCCTGCCCCTCCTGTCCAATGCCGAATGCAAGAAGTCCTGGGGCAGGAGGATCACCGACGTGATGATCTGTGCCGGGGCCAGTGGCGTCTCCTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168925-CTRB1:NM_001906:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(41.6=96.3)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAAGTTCAGCATTCTGA
R:
CTGGCCCCGGCACAGATC
Band lengths:
286-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)