BtaINT0002583 @ bosTau6
Intron Retention
Description
Chymotrypsinogen A Chymotrypsin A chain A Chymotrypsin A chain B Chymotrypsin A chain C [Source:UniProtKB/Swiss-Prot;Acc:P00766]
Coordinates
chr18:2606258-2606649:+
Coord C1 exon
chr18:2606258-2606438
Coord A exon
chr18:2606439-2606515
Coord C2 exon
chr18:2606516-2606649
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TACCCACCCTGCCCTTCCAGATG
3' ss Score
10.48
Exon sequences
Seq C1 exon
GTTTTCAAGAACTCCAAGTACAACTCGTTAACCATCAACAATGACATCACCCTGCTGAAGCTGTCCACGGCTGCAAGCTTCTCCCAGACTGTGTCTGCTGTGTGCCTGCCCAGCGCCAGCGACGACTTCGCTGCCGGGACGACGTGCGTCACCACAGGCTGGGGCCTGACCCGATACACCA
Seq A exon
GTGAGTGAGGGGTGACCACGGTGGGCTGGCGGGGAGGTGGGGAGCACGGTCGCTGACTACCCACCCTGCCCTTCCAG
Seq C2 exon
ATGCCAACACCCCTGACCGGCTGCAGCAGGCGTCCCTGCCCCTCCTGTCCAACACCAACTGCAAGAAATACTGGGGCACTAAGATCAAAGATGCCATGATCTGTGCGGGCGCCAGCGGTGTCTCCTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011995:ENSBTAT00000015915:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGCTTCTCCCAGACTG
R:
CAGTTGGTGTTGGACAGGAGG
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development