Special

HsaINT0043554 @ hg19

Intron Retention

Gene
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:17937]
Coordinates
chr10:124596920-124598747:-
Coord C1 exon
chr10:124598533-124598747
Coord A exon
chr10:124597071-124598532
Coord C2 exon
chr10:124596920-124597070
Length
1462 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CACCTTCACATCCATTTCAGCTA
3' ss Score
7.94
Exon sequences
Seq C1 exon
GCTTGATCCAGATGGAAGCTGTGAAAGTGAAAACATTAAAGTCTTTGACGGAACCTCCAGCAATGGGCCTCTGCTAGGGCAAGTCTGCAGTAAAAACGACTATGTTCCTGTATTTGAATCATCATCCAGTACATTGACGTTTCAAATAGTTACTGACTCAGCAAGAATTCAAAGAACTGTCTTTGTCTTCTACTACTTCTTCTCTCCTAACATCT
Seq A exon
GTAAGTCCTCATTTACACAACCTTCACCCACATCTCCTACAAGCACAGGTTACACACTCTTCTGTCCGGGTTCTTATAATCTTCAGTCTGAGTATATTCCCTCAGAGTCTTCTCTATCTGAGAGAGCAGTAGTTCTCTAACTTACATGTGCATAAGAATCATCTGGAGAGCTTGTTAAATCACAGATCCTGGACCCCATCACAGATATTGTGATTCATTGGTTCTGGATGGAGCACATGATCTTGACTTTCTAACTAGCTCCCAGATGAGGCAGAGACAAGGGGCTGATCAGATGGCTACATATTGAGGGGTACTGTGTTAGAGCCCAAAGCGGAGATTCTGCATTCAGCCTGTTTAATAGTAACCCTGGTATCTTCTGCAATGCCTCTTCAGGGACTGCACCTCCCTATGCTCTGATTCCTTAGATCTTGGTTCGGGTTGTTGAACCTTCCTGTTTAACAAGTCCCCCGGATGATTCTGACAAAGAAGACTGGAGAGTGCATGCTGGGAATCTCTGGGCTCACCATTGAAATTTAAGACTGTCAGGTGATTGGAGGCTACATTTACAGGGCTCTGCATTCACAGCACCTACATTCCACTGTGATCCGAAGCAGAATGCCAAGAACATCTGCGAGTGGGTTCATGAGGAGAGCTCCACTGTGGATTTCTTTCCAAGGCCCAGAGCTGACCATGTCACTCTCCTGCTAAAACCACTGACTTCTTGGTACCAGCAGATCTCCAGAGTGCAGCAGTCAAGGTTTTCCCACGCTGGACCCAGGCCACCTTTTCAAGCCTTGCCTCTAGCTGCTGCCTGGCGTGCACCCTATGCTTCAGCCAATCTAAACCATTTTACAGCTCCAAAAAGAGCTCTCTGCATTGTTTCTCCACATTTCATCTGTCCAGCTGCTTCCTTATGTACTTACTGGGGAAAGGAGAGACCAAGGGCTGCTTCATGAAGGCTGTTTCTGAGCTGAGCTTTGAACAATAGCATGACGAGGGTAGGTGGAGGTGGGAGTCAGGGAAGAGGACTCACCTCTGCTGGAGCTGACAGCTGAGGAGTCATGGGAAGAAAGGGAGGATAGAACAGAAGGCCATGAAGTAGTGGCGGATGAGACTGGAAAGCTGAGCTGGTGAGAGTGAGGAAGAGCCTTCAAGGGAGGGTGTGACTTTATTTTCTATGGCGCAATTCAGGTAATGGGAGTCTCTCCAGATGCAACACATGTTACAGCACAACTTTAATATGATTCGTTTGGCAATAGTATAAAGATTCCCTCTCTGCCCTGCACCAGTGGACAGAAATTTCAATGATAAAAAAGGATGAAAACCTCAATATGTGACCCATGGGAAAGATAGAGATGGAATCATACTCAGGAGAGATGTGTTAAGCTCAATGCACAACACAGAAATTAAAAGCAGTCTCTATTTTGATGTTCATTCTTGACCACCTTCACATCCATTTCAG
Seq C2 exon
CTATTCCAAACTGTGGCGGTTACCTGGATACCTTGGAAGGATCCTTCACCAGCCCCAATTACCCAAAGCCGCATCCTGAGCTGGCTTATTGTGTGTGGCACATACAAGTGGAGAAAGATTACAAGATAAAACTAAACTTCAAAGAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161-CUZD1:NM_022034:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0043115=CUB=PD(69.1=89.0)
A:
NA
C2:
PF0043115=CUB=PU(42.2=90.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGGAAGCTGTGAAAGTG
R:
CTTGTAATCTTTCTCCACTTGTATGT
Band lengths:
334-1796
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development