HsaINT0044150 @ hg19
Intron Retention
Gene
ENSG00000198457 | CYP21A2
Description
cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:HGNC Symbol;Acc:2600]
Coordinates
chr6:31973765-31974289:+
Coord C1 exon
chr6:31973765-31973854
Coord A exon
chr6:31973855-31974142
Coord C2 exon
chr6:31974143-31974289
Length
288 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
3' ss Seq
GCCCCCAGCTCCTCCTGCAGACA
3' ss Score
6
Exon sequences
Seq C1 exon
ATGTGGTGGTGCTGAACTCCAAGAGGACCATTGAGGAAGCCATGGTCAAAAAGTGGGCAGACTTTGCTGGCAGACCTGAGCCACTTACCT
Seq A exon
GTAAGGGCCGGGGGCATTTTTTCTTTCTTAAACAAATTTTTTTTTTGTTAGAGATGGGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAATTCCTGGTCTCAAGTGATCCTCCCACCTCGGCCTCAAGTGGGAGCCACCTTCGGGGGCTTCCCCAATCCTCCAGGTCACTGGAAGCTCTTGGGGGGCATATCTTCAGGAGAAGAAGCAGGTGTTGAGGAGGCAGAAGAAGGTCAGGCCCTCGGCTTCCTTGGTCAGTTCCCACCCTCCAGCCCCCAGCTCCTCCTGCAG
Seq C2 exon
ACAAGCTGGTGTCTAAGAACTACCCGGACCTGTCGTTGGTCTCTGCTCTGGAAAGCCCACAAGAAGCTCACCCGCTCAGCCCTGCTGCTGGGCATCCGTGACTCCATGGAGCCAGTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198457-CYP21A2:NM_000500:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTGGTGCTGAACTCCA
R:
TCACAGAACTCCTGGGTCAGC
Band lengths:
236-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)