GgaINT1010884 @ galGal4
Intron Retention
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:40451-41196:-
Coord C1 exon
chr16:41102-41196
Coord A exon
chr16:40603-41101
Coord C2 exon
chr16:40451-40602
Length
499 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ATATGGGTGTCACCCCACAGCGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCCAGAGGTGGTGGTGCTGAGCTCTGCAGCAGCCATCCGTGAGGCACTGGCACGGCGCTGGGGGGACTTCGTGGGACGCCCCCACAGTTACCTGG
Seq A exon
GTATGGGGGGGCTGTAGGGGTTGGGAGGTCCCCATGAGGGTTTGGGGTGAGTCAGAGGGGGGTCCCTGTGAATCTTCAAGGGGGGTTCTTTGGGATTTGTGCTCCTGGGGAGGGTCCCAGGAGGAGGTCTGTAAAGATCTCTATGGGTATCTGAGGGGGTTCTGGTGGGTCCTTGTAGGTTTCTGAAGGGTTCTGGGGGGTACTAATTGGTGTCTGGGGGGGGGGCCTGAGGGGTCCCCATGGCTTTTGGGTGGAGGGAGGTCTCTATAGGTCACTGTTGGGTATCTGGAGGGGGTACTGGGGGGGTCCCCATGATCTCTGAAGGGGTCTGGTTGCATTTTTTGGGGGGGAGGAGATCTCTAATAGTCCCCATGGGTGCTGGAGCAATCCCAGTGGGTGCCTGGGGGATTCTGGATGTGTCCCCAAGGATCCGTACAGCTGTCTGAGGGGTTCTGGGAGGTCACATGGGTGCCAGGGTGATATGGGTGTCACCCCACAG
Seq C2 exon
CGTCCCTGGTGTCGCGGGGGGGGCAGGACCTGGCGCTGGGGGATGCATCCCCAGAGTGGCGACGGCAGCGGGGGGCAACGCGGGGAGCACTGGCGCGAGCTGTGAGGCACCTGGAGCCCCTCCTGGAGCTGCAGGGCTGGGCGCTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153:ENSGALT00000016503:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGTGGTGGTGCTGAG
R:
CCAGCCCTGCAGCTCCAG
Band lengths:
234-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]