RnoINT0044197 @ rn6
Intron Retention
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4488485-4489001:-
Coord C1 exon
chr20:4488912-4489001
Coord A exon
chr20:4488628-4488911
Coord C2 exon
chr20:4488485-4488627
Length
284 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTCTACCATCCCTCCTGCAGGAA
3' ss Score
11
Exon sequences
Seq C1 exon
ATGTGGTGGTGTTGAACTCTAACAAAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTTGCTGGCCGACCCCAGATACTAGATG
Seq A exon
GTAAGGGGTTGGGACATAGTTTTCTTCTAATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCTTTTTATCACTCCCTCTCTTCCTCTTCTTCAAGATTGTGTCTCATTATGTAGCCCTTGCTGAACTGAACATCACTATGTAGACCAGGCTGGTCTCAAACTCACAGAGATCCACCTGGTATAGCCACTGCCCTGAGCTAAGTGTAGTTCCTGGACTCTGCGAGGCAGGTCTTTGGTTTACTCGGCTGGCTGTTAAGATGCCTTTCTACCATCCCTCCTGCAG
Seq C2 exon
GAAAGATGAACTTTGACCTCTCCATGGGGGATTATTCTCTAACATGGAAAGCCCACAAGAAACTCTCTCGTTCGGCCCTGGTGCTGGGCATGAGAGACTCCATGGAACCTCTGGTAGAGCAGCTGACCCAGGAATTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428:ENSRNOT00000031548:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGTGTTGAACTCTAACA
R:
CAGAATTCCTGGGTCAGCTGC
Band lengths:
228-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]