GgaINT0044915 @ galGal4
Intron Retention
Gene
ENSGALG00000008121 | CYP17A1
Description
steroid 17-alpha-hydroxylase/17,20 lyase precursor [Source:RefSeq peptide;Acc:NP_001001901]
Coordinates
chr6:22926827-22927383:-
Coord C1 exon
chr6:22927060-22927383
Coord A exon
chr6:22926966-22927059
Coord C2 exon
chr6:22926827-22926965
Length
94 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CGTGGCTGTGTGTCCCACAGGTG
3' ss Score
12.53
Exon sequences
Seq C1 exon
AGCAATCCCACCATGCCGCCGCTCGCTGTCCTGCTGCTTGCCCTGGCCCTGCTCTGTGCCTGGAGGCTGTCGTACAGTCAGGGTCCCACGGGGACGGGGACGGGGCGGCCGCGGAGCCTTCCAGCCCTGCCGCTGGTGGGGAGCCTGCTGCAGCTGGCCGGGCACCCGCAGCTCCACCTGCGGCTCTGGCGCCTGCAGGGCCGCTACGGCAGCCTCTACGGGCTCTGGATGGGCTCCCACTACGTGGTGGTGGTCAACAGCTACCAGCACGCCCGGGAGGTGCTGCTGAAGAAGGGGAAGGCTTTCGCCGGACGGCCTCGCACC
Seq A exon
GTGAGTCATGGGGTCACGGCGACAGTGTTGGCGGACCCCCTGGTGTGGGGTGAGGATGCTGCACGGGGTGATCCCGTGGCTGTGTGTCCCACAG
Seq C2 exon
GTGACCACGGACCTACTGTCCCGCGGGGGAAAGGACATCGCCTTTGCCAGCTACGGTCCCCTCTGGAAGTTCCAGCGCAAACTGGTGCATGCTGCCCTCTCCATGTTTGGGGAGGGCTCAGTCGCCCTGGAGAAGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000033172:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.3=68.3)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTGAAGAAGGGGAAG
R:
GACTGAGCCCTCCCCAAACAT
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]