RnoINT0044155 @ rn6
Intron Retention
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266426101-266428239:-
Coord C1 exon
chr1:266427818-266428239
Coord A exon
chr1:266426237-266427817
Coord C2 exon
chr1:266426101-266426236
Length
1581 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCTTTGCCTGCTCTCCAAAGGTG
3' ss Score
9.15
Exon sequences
Seq C1 exon
AAACTTCTTCAGGCCAAGAGATAACTCGACGTCAAGGTGACAATCAGAAACGCCCTTTAAAAGTCCTCCTTCTTGGTTGAAGTTGCTCCGCTCCACAGCTGGCCATCTGCCTACACCTGGCTGCCATGTGGGAACTTGTGGGTCTCTTGCTGCTCATCCTAGCCTATTTCTTTTGGGTCAAGTCAAAGACGCCCGGTGCCAAGCTCCCCAGGAGCCTTCCATCCCTGCCCCTGGTGGGCAGTCTGCCGTTTCTCCCCAGACGTGGTCATATGCATGTCAACTTCTTCAAGCTACAGGAAAAGTATGGTCCCATCTATTCTCTTCGCCTGGGTACCACAACTACAGTGATCATCGGCCACTATCAGCTGGCCAGGGAGGTGCTCATCAAGAAGGGAAAAGAATTCTCTGGTCGGCCCCAGATG
Seq A exon
GTAAGCAGTGCCAGCCCTCCTCTTCCTCAGTCCCTGGGGGTTGTACAGTTCTTAGTTCTTTCAAAATCAGACTTGCGGGACCACTCCCTGAAGACCCTACCAAGCCTGTAAAGTGGGAGGGAGGAAATAAAGGGAGACCTCTTGAATGGCTTGTCCAGCAAGATGGTGAGGGACCTGCAGAGCTGAGAAGCCTGCAAACCCCTCACCATCTCCCTTCCGATAATCATTCTAGAACATGCAGGCAAAGCCCTTCTTAGCCCAGACCCAGAGCTAAAGTCTGCCAACAGGGTGACTTTGTTGGGAAATCGGGCAGTGGCTGCATCTTCCACCAGAAGATAGGTGGAGAAGCAGCTGGCCTCACGGAGGGCTAAGACTGCAGTTTCTCTTATCATATGGCTTCAGCTCTCAGATAGCTGGGGGATATTACAGGGAGAGACGGGACAGGGACATACAGTAGTACCTCGGGGCGTCTGACCTCTTTGTGCTGACTATTGAGTGGCCATCCTACGAATACCACCTGTGCTCTGTCCCTGCTGCAAGTGTTTCTCTGAGCTCCCCAATAGAGGACCCCAATAGAGGACTACTGGCCTCAGCCTTGAACGGGCCAAAACCAATTCATTTTCTGCGGGCTAGTCAGCCAGACTGGCTGCCCGACTACCGGGTCTCCCAGATTTTGGGTGCCTCTCAGAAGCAAAGGAATAACTGGGCCAGGTGATGGTGATGCATGCCTTTAATGCCAGCACTTGGGAGGCAAAGGCAGGCAAACCTCTGTGGGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCTGGATAGCCAATGCTATACGGGGAGACCCCTGTCTCCAAAAACAAACAAACAAAAACCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGACAGAGACGGAGACAAAGACAGAGACAGGCAGAGAGAGACTAGCCAGGTGGGTTTTTTGGGGGAGCGGGATGTAGGAGGAGGACTTTACACGCTTGTGCTTTTGTGTCTTTTAGAGGAGACAGTCCAAGCTTAAGTCTAACCTGGGAAGATAAAACATATGCTGTCTCCAAATGAGGGTCTGAGGCTGGGTGCGCAGCCCAGCAGTGGAAAGAGATTCTGTGGCTTTAGCAGCCTAGGGAGTGAAGGCAAAAACAGAGCTGTCTTGGAAGTCCCTCTGTATCCTCCTCCTCCTCCTCCTCCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCCTAGGACAGGCTTGCCTAGCTCATCCCACCCACAACTACCCTCTAGGTCAAAAACCGAAGTCGAGAGGCCCAGGGGGCACTCTACTAATGATCTGAACCCCAGGGCTCTTGCGTTCAAACCCAGAGTTCTTTCTGTCTTCTCGATATACTGCCTTTCATGGAATTTTAGCAGGGACTTTAGGGCCGTCCTACTAAGTAAGAGAGGGACAGGGAGCTCACAGCGCTCAGGACTGCAGAGTCTGAGAGCTTGGGGAATTTGCCTACAGCCTTTGCCTGCTCTCCAAAG
Seq C2 exon
GTGACTCAAAGCCTCTTGTCGGACCAAGGGAAAGGCGTGGCCTTTGCAGATGCTGGTAGCTCCTGGCACCTGCACCGGAAGTTGGTGTTCAGCACCTTTTCCCTGTTCAAGGATGGCCAGAAACTGGAGAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035:ENSRNOT00000027160:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.3=71.7)
A:
NA
C2:
PF0006717=p450=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCTCTTGCTGCTCATC
R:
CTACCAGCATCTGCAAAGGCC
Band lengths:
344-1925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]