DreINT0054112 @ danRer10
Intron Retention
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45831350-45831955:-
Coord C1 exon
chr23:45831824-45831955
Coord A exon
chr23:45831489-45831823
Coord C2 exon
chr23:45831350-45831488
Length
335 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTCTCTGTGTGTGTGTGCAGGTG
3' ss Score
11.47
Exon sequences
Seq C1 exon
CTGTCGTCTCAGTACGGGCCGCTGTTTGGGCTTTATGCCGGGCCGCACCTCACGCTGGTGGTCAGTGAGATCGGTCTGGTCAGAGAAGTGCTGCTGCAGCGGGGCAGAGAGTTCGCCGGACGGCCCAAGATG
Seq A exon
GTGAGCACACTCCAACAAGCAAAACATGTGTCATGATTTACCCTGACATCTGAAGACTGTAAAAGCTGACATAGCAAACAGCTTTCTAACAAGCCTGAAGGACTCGGATCATTTGATCAGGTGTGACTAATTGAGGTTAGATCTAAACTGAGCAGAGCTGCAGGACCTGAGTTTGACACTACTGGATTATACACATTTCAGTGATAACGGAAGACTAGTTACCTCAGAGAAACGCAGAGCACCCATACACTGCAGCACTATTTAATGTCCTCCATAAAGCAAACATGTATCAGAGCTACAGCAAGGGATGTATCTCTCTCTGTGTGTGTGTGCAG
Seq C2 exon
GTGACCACCGACCTGTTGACTCAGGGTGGGAAGGACATTGCGTTTGCAGACTACAGTCCACTGTGGAAGAACCACCGGCGTCTAGTGCACTCCTCGTTTACACTGTTCGGCGAGGGCTCAAATAAACTGCAGACCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966:ENSDART00000076086:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGTCTCAGTACGGGCC
R:
CGATGGTCTGCAGTTTATTTGAGC
Band lengths:
271-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]