HsaINT0044151 @ hg19
Intron Retention
Gene
ENSG00000198457 | CYP21A2
Description
cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:HGNC Symbol;Acc:2600]
Coordinates
chr6:32007323-32007612:+
Coord C1 exon
chr6:32007323-32007424
Coord A exon
chr6:32007425-32007525
Coord C2 exon
chr6:32007526-32007612
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCTCATGCTTCCTGCCGCAGTTC
3' ss Score
7.73
Exon sequences
Seq C1 exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGG
Seq A exon
GTGAGGACCTGGAGCCTAGACACCCCTGGGTTGTAGGGGAGAGGCTGGGGTGGAGGGAGAGGCTCCTTCCCACAGCTGCATTCTCATGCTTCCTGCCGCAG
Seq C2 exon
TTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGATCACATCGTGGAGATGCAGCTGAGGCAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198457-CYP21A2:NM_001128590:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAACTTAATGCCTGCCT
R:
CCTCAGCTGCATCTCCACGAT
Band lengths:
179-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)