HsaINT0044269 @ hg19
Intron Retention
Gene
ENSG00000138109 | CYP2C9
Description
cytochrome P450, family 2, subfamily C, polypeptide 9 [Source:HGNC Symbol;Acc:2623]
Coordinates
chr10:96698415-96701777:+
Coord C1 exon
chr10:96698415-96698607
Coord A exon
chr10:96698608-96701614
Coord C2 exon
chr10:96701615-96701777
Length
3007 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ATCTCTGTCTACTTTCCTAGCTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTCTTAACAAGAAGAGAAGGCTTCAATGGATTCTCTTGTGGTCCTTGTGCTCTGTCTCTCATGTTTGCTTCTCCTTTCACTCTGGAGACAGAGCTCTGGGAGAGGAAAACTCCCTCCTGGCCCCACTCCTCTCCCAGTGATTGGAAATATCCTACAGATAGGTATTAAGGACATCAGCAAATCCTTAACCAAT
Seq A exon
GTAAGTATGCTCCTTCAGTGGCTTGCAAAAGGTAAGTAAATTCACCTGTATTTTTTAAATAAAGTGTATCCCTAGAGGTACATGTTACAAGAGGTAATGGTAAAGTAAAATACTTTGAAAGGCTTTTGTTGCCTTTTCCAGTCTGTCAGTGTCAGAAATAGTGGAATGAAACCATGTATTTTGTGAGTAGAGAAAGATTTGGGTCTTTGCATGTTAGATTCAAAATAACAAGTGTCAATAGTTTGAAAAGCTGTGTTCCTTCTTCATTTCATAACCATTTGCTATAATTTTTGGCTGAAGGTAAATGGTAAGGTATTGTGGGATCTGGTCAGCAGCCCACAAAGCAACTGGGCTCTCTCTTTTTTCCCAGGTGGATCGGCAGGTTGAGAAATAATAGACACACAAGATAGTGAAAGCTGGGTCCAGGGGGGTCACCGCCTTCTGGTCCCATGGTGCCAAGAATGCACTGGATATACCAGCATTTATTATTAAGTTTAGTGAGGGCAGGGGTAGGTTAGTGAGGGATTTAGGGTCATTTGATTATGAGGTGAGATGGTCACATGGGGATGAAGTAATTCTTTAACATAACATTTGTATGTAGAAGTACAGTACATTTGTATGTAGAAGTACAGTATACGGAGATAAGAATTTACAATATAGTGTGTGCGTCAGTAATTTCTAACAGAGCCTTAAAACAGAAACACAATCTTTCCATAACCTATGATTAGCAAGATATTAATCAGCAGTAACAATTGCAACAAAAGCTGGTTACAAACAATCCATGGAAATAGGATGTGAAGCTAGACAACCAGTTAGACCAGAAATTCTCAGAAGGGAGTATGCCTTAACCCTAAAGAGGCCTAGAAGAGCCATGGCAAGATGAGGGCATTTATAGCCCTATCTTATCCATATGGACAGGTGCCCCCCATGCGTCCATTTATAGGTTCTCCACAAAGGTCGCATTCCATTCCCAGAGCTATGAACATCTGCTTTTCTGGGATAGGAATCTTGGTGATGTGAAACCTCTCTGACTGCACGTCCATTCATAGGCTCTCTGCAGGGGGAAGCACATCACGCGCTGTTGGCTCATTCTGGCAGTCCAGCCTGGCACTGTCCTTACACAATCCTGCATGCAATTTTGTATTTACAATAATCGGGAGCATTTCATCTTTTATTCCGTAGCAATAGTTTCAGGGGGGGTCTCCCTACAGTAAGGAACATGTTTGTTATTAGAGATTTTATTAAATAAGTCCTCTACTATATTAGCCATGTGTTTTATTCAGAATAGCCATGAAAATTAAACTTCTCTGAAGAATTAATTTATGCCTGTTGTAAAGGAAATAACTGTGGGTTCAGGACCAGCAAAAGCAGATAAGTGGTAGAAAAGAAGTTATAGACTTCCATTTTTAGATCCACAAAGTACTGTTTTAATTATACTATAGCTACAATATATAAACCCCAAAATGACCTTAGCATTTAGTAATGGTAGGAAGAAGGTCAGAAGATGTATAAGTATTAGGGTTTTTTCTCAAGTGAAAGATGGTTTAGCAGTGTTAATATGATATGTGAACACCCCTCGTTGTGTAATAATTACCATATACAGAGAGTAAAGGGCTGCAATTAGTATATTAAGTCTTATAAGCATGATGGTATGATTAGATCAAGAGAATGACGCTGTAGTTATGAAGACTACTCCTACTAGATTGATGGTAGGGGGCAGGGCAAGGTTGGCAAGACTAGCTAGGAGTCATCACATGGCTATCAGGGAGAGAAGTGTTTGAAGGCCTTGTGTTAGTAGTATGGTTTGGCTGTGAACTCGTTTGTAGTTTGAGTTTGCAAGGCAGAATAATAGGGATGAGGTTAGTCTGTGGGCAGTTATTAGGGAAGTTGCACTGGTAAAACTTCAGGGGGTTTGAATGAGAAAAGCTACGATAACAAGTGCCATGTGGCTTATGGAAAAGTAATGAGTGATTTTAGATCAGTTTGGCACAGACAAAAGGAGCTTGTTATGATTATTTCTCAAAAGGATAGTAAGAAGGAGGAATAAGCTATAAACTCTGTTAGGGGGTTAAGAATTAAGGTGATTTGTATAATCCTATAGCCATCTAATTTTAGGAGTACTGCTGTGAGGACTATTGACCTGGCAATTGCGGCCTCTATGTGGGCTTTTGGGAGTCCTAGGTGGAGTCCATAGAGAGATATTTTTAGTATAAATGCTATGATGCATGCTAATCATAAAAGGCTATTAAACCAGGAAATTGTTAGTTCTTGAAGCTGGGTATTGGTCTTAAGGTAGACTCGAAAGTGCTGATAAATTTCTCAAGCATCAGTGTTTGAATAAGCGGAGTTTCAAATTTTGGTCTGCTGTACATTAGCTGTGAGACACTGAAAATGAATTTGTCATTCTCTGAGCTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGTAGCTCAGGCTGGAGTGCAGTGGTACAATCTTGGCTCACTGCAACCTCCATCTCCCAGGTCCCCATTCAAGAAATTCTCCTGCCTCAGTCCCCCAAGTAGCTAGCATTACAGGCATGCACCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGACGTGGTATCACCTTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCAGGAGCCACCACACCTGGCCGTTTGTTTAAAATAGAGTAAATAGACCTGCTGAATATGTTGATGTGAGTATTAATTGTAATCTGCATAGCAATTGTCTGACCATTGCCTTGAACATCACAGGCCATCTGAGTGGCAAGTATAATCATCATCATGTTTCTATTTAAAATTCAGAAATATTTGAAGCCTGTGTGGCTGAATAAAAGCATACAAATACAATGAAAATATCATGCTAAATCAGGCTTAGCAAATGGACAAAATAGTAACTTCGTTTGCTGTTATCTCTGTCTACTTTCCTAG
Seq C2 exon
CTCTCAAAGGTCTATGGCCCTGTGTTCACTCTGTATTTTGGCCTGAAACCCATAGTGGTGCTGCATGGATATGAAGCAGTGAAGGAAGCCCTGATTGATCTTGGAGAGGAGTTTTCTGGAAGAGGCATTTTCCCACTGGCTGAAAGAGCTAACAGAGGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138109-CYP2C9:NM_000771:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)