DreINT0054318 @ danRer10
Intron Retention
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:102397-104338:-
Coord C1 exon
chr15:104152-104338
Coord A exon
chr15:102560-104151
Coord C2 exon
chr15:102397-102559
Length
1592 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATGTCTGTTCTTTTAATCAGTGG
3' ss Score
7.51
Exon sequences
Seq C1 exon
CTGATCAGTCAGAGGAATGGAGCTCTCAAGCTCACTACTGCTGGTTTTGGTCTTGACTGTGTTGATGTTGATCAGATGGAGGAGGAAGGAGAACGGACTTTCTTTGCCCCCGGGGCCACTGGCACTGCCACTGATCGGAAACTTACTAACACTGGACAAAAGTGCCCCATTTAAGAGCTTTATGAAG
Seq A exon
GTAAGGGAGAATGCAGGATTCATCTTGTTTAAACAAAAGCACATGAGAATTGTCATGCAGTAAACGTGTTTCTGTCTGCTGCAGACGTTATGGGCAGCTAACATTAATGCTCTTTTAACTAGGGTCTGAAAACTAATCTGACTAACTGATCTAACCTGCAGTTTGTCTTGTGCAGTTGTGTAATTCAGCTTTTGTTTTTTCTGTGCCAATTTATTATAAAAACAACAACATGATTTTATTCCTGTATTTCATCTTTCATCAAATGTCTTCATTGCTGAGTGGTAACAGCAGTCTTTAGTCACACAGCAAATTCCAAGCATGTCATGGTATATGATGATTGAGACAAAACCCACCAGTCACAGTTTATACTGATTAACATGCAGTTAATGAAGGCAGGATCTGGTGTTGATAGAGAGCATGGATGAGATTAAGCCAGTGTCATATACAGCCAAACACCTGAATGAGCATTATAAGGAACGATGATACAAACGTAAACCTGTGCCAATGGCCCATCTAAATGCTGAATCATCATTTAAGCAGTGGAAAGACACCAGTAAAACAGCTTGTAAACAATGTTATACAACATGGCGGATTTACCTCAAGAAACCTGTAAATTGTCAAGAAAAATCATTTAGAGAAAAGCACGTGGCTATATACTATGCAACATGTTTTGTGTTGTGCTCATGTGTTTGTGTGCTCAATTCCAGGTTAACTGTTATCCTGCATATGCAGATCTTCATACATCTGATTTTTTGTGTTTTTTACCAGACTTACAGCTTTGTCCATAAGCAATGTTTTTTAGCAATATCAATTCAACTTAAGTCTTTGCAAATAGGGTTCAATTTCTTATTGCATTAGATGGGGCAATGGTAGATGATCACAGCTGGATGAAAAGGTTGAAGAAGTGGGCTTTGGATACCTCTTATCTTCAGGCAACTCTGAATGATCTGCTGGTGCGGTAAGAATCTAACCAGCAGAACAGGGTTCCAGGGATGCCCATTCAGGAAAGGGTGGACCTAAATCTGATGATTCACTGTTAAAAAGCAGCAGATGGGTCCAGCAAGAGCAGAATGGGTGATGCAGAACCTGCTTTGACAATCTGCAGGCCTTCAGAAACCAAGAGTAGAGCAGTCACAGTGGAACAGCCACATTTACAGCCTGATGGATTTGCATCCAGGAGATTATTCTGTGCAAGAAATGTGACAATAGTGTTTTCCAGTGATTTGCAGATGAAACCAAGGAGAGAGAATAGTGTGTAATTTTCAACCATTGAGATATTAAGTGATGTTATTTGAGCAGCAGTGCGACCTGGACCTGTTGAAGGTGTTAGGGAATGTGCCCATGCGGAGTGAAGTGTTGCCAGCACAATAGTCGGGGCAATGTCCTGCAGGGTGTGTGAGTGGTTTGGGTCCAGAGGGCAGCTTGTTTTTTAAACATGAGATTTTTTTAAGCAATCCTCAAATATCAAATATTTTTGAGTTGCCACATAATTTTTTATCAAATGAAACGTGTTTCTGAGATCAATGTCATTGTTTTCCAACCAGTTTATTTTCTCATTAGTGTTTGATAATGATGTCTGTTCTTTTAATCAG
Seq C2 exon
TGGAGAAAAACCTATGGGTCTGTGATGACGGTGCACCTCGGGCCTCAGAGAATGGTGGTACTGGTGGGTTACGAAACAGTGAAGGAAGCTCTGGTGGACCAGGCTGACGACTTTGCACCCAGGGCTCCCATTCCCTTTATGAACAGAATTGTGAAGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423:ENSDART00000164323:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAGGAATGGAGCTCTCA
R:
CGTAGCCCTTCACAATTCTGT
Band lengths:
344-1936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]