MmuINT1008075 @ mm10
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:26808892-26809845:+
Coord C1 exon
chr7:26808892-26809106
Coord A exon
chr7:26809107-26809682
Coord C2 exon
chr7:26809683-26809845
Length
576 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GTATCTTTCTTCACTCTCAGCTC
3' ss Score
8.41
Exon sequences
Seq C1 exon
CTGGATCCCAAGGCACAAGCCCTCAACTTAGCACCATGATGCTGGGAGGAGCCTTCAGCATCTTTATGGCACTTTGTTTGTCTTGCCTGCTCATCCTGATTGCTTGGAAGAGGACCAGTAAGGGAGGAAAGCTGCCCCCCGGCCCCACACCAATACCGTTTTTGGGAAACTTCTTACAAGTCCGCACTGATGCCACATTTCAGTCCTTCCAGAAG
Seq A exon
GTTAGTGTGCTCATTTCTTCTTATAGTGATGAAGGTCACAGATGGCACAGCTGAGGTCACACAGAAACTCATCACTTCTAAACGCAGATTCAGAAACAAACTTTAGGAAACATAGGATTCTGAAATTACAGGATCTTAAAAGCAAGGGGGAAAAAATCTTAGAAACACTGAGTACTCTAGGCAGAATCCCCTTTTTCTCAGGACTTTAGCTCATGATCTAAGGATTAGGGGGAACCTCATTTCTTTAAGCCCAACTTTCATATTCAAATTGTCTTAGAGTTTTAAGATGCCAGAAACCTAGCATTTCCAAGAGTGTGGTTGTAGATCTCAGAGTTCAGCTAGTCTGACCCCATTATTTTATAAACAAAACTAAGATGTACAAAATTAGGAATATTTGCTGTCTGAGGTCACAGGAGTCATTCTGTGTTTTTTTTTCCCCAGTAGCCCTTTCAAGCTCAAAACCTTCCTCTAGTCTACCTTTTCATTCTCCTAGAATCTCTGCCCTCTACAATGCCCTGACACAGCTCTGTCATGCTCCAATTTACTCCTTCCTTCAGTATCTTTCTTCACTCTCAG
Seq C2 exon
CTCCAGAAAAAATATGGCTCTGTGTTCACTGTGTACTTCGGTCCAAGGCCAGTGGTTGTCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGCCGTGGTGAAATGCCTACACTAGAGAAGAACTTCCAAGGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685:ENSMUST00000040944:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAGCCCTCAACTTAGCA
R:
AGTGTAGGCATTTCACCACGG
Band lengths:
343-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types