RnoINT0044378 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83626639-83627577:+
Coord C1 exon
chr1:83626639-83626818
Coord A exon
chr1:83626819-83627414
Coord C2 exon
chr1:83627415-83627577
Length
596 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTATCTTCCTTCACTCCCAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
ATGGCACTGGGAGGGGCCTTCAGCATCTTTATGACGCTCTGCTTGTCTTGCCTGCTCATCCTGATAGCTTGGAAGCGAACCAGCAGGGGAGGAAAGCTGCCTCCCGGCCCCACACCAATACCATTTTTGGGGAACCTGTTACAAGTACGCATTGATGCCACATTTCAGTCCTTTCTGAAG
Seq A exon
GTTAGTGTGTCTGTTTCTTCTTATAGTGGTTAAGGCCTCAAATGGCACTGCTGAGGTCACACAGAAACTCATGATTGTTAAATGCAGATTCAGAAGCAAACTTTAGGAAACATAGGAATCTGAAGTTACAGAATCTTAAAACCAAGGGGGAAACATCTTAGAAACATTGAGTACACTAGACTCTTGAGTACACTAGACAAAACCCCTTTTGGGTTCTCTTTTCATCTAGTTCATGATCTGAGGATTTGGGGGAATCTTATTTCTTTAAGTACAACTTTCATATTCAAATTGTCTTAAAATGTTAAGATGCTAGACCTTAGCATTTCAAAGAGAGTGGCTGTAGATTTCAGAGTTCAGCTAGTCCTACCCCATGGTTTAAAAAAAACAAAACTAAGACAGAAAAAATTAGGGGTATTTGCTGACCAAGGTCACAGGAGTCATTCTGATGTTTGCTCCCCAGTAGCCCTTCCAAGCTCAGGACCTTCCTCTGGTCCTACCTTTCATTCTCCTAGAATTTCTGCCCTTTACAATGCCCTGGCATGGTTCTGTCATACTCCAATTTACTCCTTCCTTCAGTTATCTTCCTTCACTCCCAG
Seq C2 exon
CTCCAGAAAAAGTATGGCTCTGTGTTCACCGTATACTTTGGCCCAAGGCCAGTGGTTATCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGTCGTGGTGAAATGCCTACACTAGAGAAGAACTTTCAAGGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGAGGGGCCTTCAG
R:
ACCTTGAAAGTTCTTCTCTAGTGT
Band lengths:
335-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]