RnoINT0044243 @ rn6
Intron Retention
Gene
ENSRNOG00000020817 | Cyp2a3
Description
cytochrome P450, family 2, subfamily a, polypeptide 3 [Source:RGD Symbol;Acc:2465]
Coordinates
chr1:83711251-83711848:+
Coord C1 exon
chr1:83711251-83711446
Coord A exon
chr1:83711447-83711745
Coord C2 exon
chr1:83711746-83711848
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CCCCATCTACCCCACATCAGCTC
3' ss Score
2.88
Exon sequences
Seq C1 exon
TCAATCCTCACTGGCCACTATGCTGGACACAGGACTGCTTCTGGTGGTCATATTGGCCTCCCTGAGCGTCATGCTCTTGGTGTCCCTCTGGCAGCAGAAAATCAGGGGGAGATTGCCTCCAGGACCCACTCCTTTGCCTTTCATTGGAAATTATCTGCAGCTGAATACAAAAGACGTATACAGTTCCATCACACAG
Seq A exon
GTATCACTGGATGAGGGGATGGATGGGACATGGGAGCACAAGAGGCTGTGATGTTTTGCATGTTTTGTGGCAGAAGATTCATAGAGGAATCCAAAGTCTTGTATTAGTGGAGTTTAGAAAGATAAGGAGCTATTTCAAGTCTTTGGTTTGTTGTTTGTTGTTTGTTTTGTTTGTTGTTTGTTTCTTTGTTTCTTTGTTTTTCAATCATTTATTTGTAGAGTAACACATAATCTGACCTCTGTGTACTGGTCCAGTTCAGTGAATAAGTCATCTAACAGCCCCCATCTACCCCACATCAG
Seq C2 exon
CTCAGTGAGCGCTATGGTCCTGTGTTCACCATCCACCTTGGGCCTCGCCGGGTTGTGGTGCTTTATGGATACGATGCAGTCAAAGAGGCTTTGGTGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020817:ENSRNOT00000028237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.1)
A:
NA
C2:
PF0006717=p450=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCACTGGCCACTATGCT
R:
TGGTCCACCAAAGCCTCTTT
Band lengths:
294-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]