HsaINT1010473 @ hg38
Intron Retention
Gene
ENSG00000198077 | CYP2A7
Description
cytochrome P450 family 2 subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:2611]
Coordinates
chr19:40881589-40882752:-
Coord C1 exon
chr19:40882031-40882752
Coord A exon
chr19:40881752-40882030
Coord C2 exon
chr19:40881589-40881751
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCC
5' ss Score
3.24
3' ss Seq
CTCCCACTCGCCTCCATCAGTTC
3' ss Score
5.81
Exon sequences
Seq C1 exon
CCCTGGGTCTTCCTAGCCCCGAGACTTTCAAGTCCATATGCCTGGAGTCCCCCCTCCTGAGACCCTTAACCCTGCATCCTCCGCAACAGAAGACCTCCAGATGCACAGCCACACTTCCATCTCACCCTAATAAAACCCAGACCTTTGGATTCCTCTCCCTTGGAATGCCCAAATCCACAACTTTGGGGTGCATTCTCACTCTCAGACCCCAAATCCAAAGCCCAAGTGCTCCCCTATGCAAATATTCCAAACTCTTCAGTTCTACAGTTTATCGGTTGCCCCCTCCTAAATCCACAGCCCTGCGGCACCCCTCCTGAAGTACCACAGATTTAGTCTGGAGGCCCCCTCTCTGTTCAGCTGCCCTGGGGTCCCCTTATCCTCCCTTGCTGGCTGTGTCCCAAGCTAGGTGGCATTCATGGTGGGGCGTGTAGTTGGGAGGTGAAATAAGGTGATTATGTAATTAGCCAAAGTCCATCCCTCTTTTTCAGGCAGTATAAAGGCAAACCACCCCACCCATCACCATCTGTCATCTCACTACCACCATGCTGGCCTCAGGGCTGCTTCTGGTGGCCTTGCTGGCCTGCCTGACTGTGATGGTCTTGATGTCTGTCTGGCAGCAGAGGAAGAGCAGGGGGAAGCTGCCTCCGGGACCCACCCCACTGCCCTTCATTGGAAACTACCTCCAGCTGAACACAGAGCACATATGTGACTCCATCATGAAG
Seq A exon
GTGTCCCAAGGCAGGAAGATGGGTGGCACAGGGTGGGGGCTGCCTAGTTGGCTGGGGCTTTGTGGCAGGGGATTGACCAGTGTGGACCAGAGTCTTAGGAAAGGGAGTTTTGGAGTTTCAGCATCCGGGTCCTAGCCAGGAAAGACAGGATCTTGGGATGTCCAGCTCCCTGACTGTGAGAACCTGGGGGTGAAGGATCCCAGTACTTGACATCTCGGTGCTGGGCCCCATTCAGAGTGGGGGCTGCTCCCTCTAACCACTCCCACTCGCCTCCATCAG
Seq C2 exon
TTCAGTGAGTGCTATGGCCCCGTGTTCACCATTCACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGTGGACATGATGCCGTCAGGGAGGCTCTGGTGGACCAGGCTGAGGAGTTCAGCGGGCGAGGCGAGCAAGCCACCTTCGACTGGGTCTTCAAAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198077:ENST00000301146:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGGCAAACCACCCCACC
R:
ATCATGTCCACACAGCACCAC
Band lengths:
304-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains