HsaINT0044275 @ hg19
Intron Retention
Gene
ENSG00000138109 | CYP2C9
Description
cytochrome P450, family 2, subfamily C, polypeptide 9 [Source:HGNC Symbol;Acc:2623]
Coordinates
chr10:96740940-96745931:+
Coord C1 exon
chr10:96740940-96741127
Coord A exon
chr10:96741128-96745789
Coord C2 exon
chr10:96745790-96745931
Length
4662 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTATGTCTCTTGTTTCTAGGGC
3' ss Score
10.43
Exon sequences
Seq C1 exon
CTAAAGTCCAGGAAGAGATTGAACGTGTGATTGGCAGAAACCGGAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTACACAGATGCTGTGGTGCACGAGGTCCAGAGATACATTGACCTTCTCCCCACCAGCCTGCCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTATCTCATTCCCAAG
Seq A exon
GTAAGTTTGTTTCTCCTACACTGCAACTCCATGTTTTCGAAGTCCCCAAATTCATAGTATCATTTTTAAACCTCTACCATCACCGGGTGAGAGAAGTGCATAACTCATATGTATGGCAGTTTAACTGGACTTTCTCTTGTTTCCAGTTTGGGGCTATAAAGGTTTGTAACAGGTCCTAGTGTCTGGCAGTGTGTGTTCTCCAGATTTATTATCTTTCTTCAAGATTGGTTTGGCTACTCTTAGGTGCTTATATTTCCAAATAATTTTTAAAGGTATTAGTTTGTCAATTTCCCAAAACCTTGGGCTGGAATTTCTGGCAGGGTGACACTAAATTTATAGGCTAGTTTGGAAAGAACTGAATCTTGACACGTTGAGGCTTTCCATTCCTGAATATAATTATGCTTCCAATTTGTTTGGGGTTTCTTTTATTTAACCAGGAATGTTGTGAATTTGTTGTCATGGCTTTCGAGTCTTTGGTTTTCCCTAGATAATTAATATTTTTGTTGTAGAACATAAATAGTTTTTATCATTCTGATGATGTTAATCTGTCAACTTTGCTAAATTTACTAGTCACTATTCGTAATTTATTTCTGGATTCATTGTAATTTCTGTGTATATTATACTGTATCTGAGTTAATATTGTTTTATTTCTTATTTTCCATTTCTCATGGGCTTAATGTCTCTTTATCACATTCATTATTGCATTAGCTAGAATTTCTAGGAGAGCATTGAATAGAATTGGTGACAGTGGGGATCCTTGTTTCTCATTTCTAATCTGCAGGAAGCAGTGGAAGTTTTCCATTTCAATATTGAGAATGATGCTTGAAGTAGATTTTGGTAGATATTTTTTATCAGATTAGAGAAGTTTGCTGTCATATATATATATGTCATAATTGTGTGTAAAATCTTGTCAAATCAACACTCTGCATCTATTTATATAATTGTGTGTTAGTCCATTTCCATTGCTATAAAGGAATATCTTTGACTGGGTAATTTATAAATAAAAGAGTTTCATTTTGGCTCATGGCTCTGCAGGCTGTGCAAGAGGCATAATGTGGGCAGGCATCTACTCCTAGTAAGGACTTCAGGTAGCTTTCAATCTTCGGAGAAGGTGAAGGGGAAGCAAGCATGTCACATGGCAAGAGAGGGAGTAAGAGAAAAAGGAGTAGAAGTGACTTTAAACAACCAGCTAGTGTGTGAACTAACAGAATATGAACTCACTTATTATCATGGGAAGAGGTTTAAGCCACTCATGAAGAATTCACCCCCATGTCCTAAATACTTCTCACACCAGAACCCACCTCCAACATTGAGAATCACATTTCAACATGAGATTTGGAGGGGACAAATATCCACACAACATCAGATTATATATATTGGGCTTACATTTCTCACTAAATAGAAATAAGTATGCACATAGAGATGAACTGGCCTTCTTCATATTGTTTAGGACTTCAGTGTTTACATTCACAAGAGATTTGGTTTATAGTTTTATTTCTCAGAATTTTCAAGATTTTTGATATTAAGATTATGCCAGCCTTATAAAACTATGCAAGAAATGTTTCCTAATGTGAGACTGTTTTTATTGCCGTTCCCTCTCCCCACTTTTCTTCTTGTGATCACTTAGTTGTATCTTTGAAATGCCTGATAACTTTTGGTTAAATACCAGATGGTATATGTAAGAAATTGCAGAATTGCAGAGGAGGTTTATATTCTTCAAAGAAAGATTCATTCCTCTCCCATCGGCAGTCATAATGACATGATACCTGTTGTCATGATTCAGAATTGGACATAATGTGAATCCAGTTGAAAATTGAGTGTCAGTGTTAGCTTAGCTCTCTGAGGTTCTCCTACCTTTGGAAGCTTGAGACCAATTTTTGTCTTGACAGCTTTGCAGTGCCTTCTATCACATGGTTTCTGTATTTATCCAGACACTCCATTTGCCATCTCAAACCTACTCTTTTCCAATCAAAACCAATATATATTATTAGTAAAATAAAAAATAATATAACTGAAAGTTGTATTTTCAAGGGGAAAAAGCAATGAGACTTGGTAAGGTTGCAATTACTAATGTCATCTTTTGAAGAAGACAGAATTGATAATTTACTTAGAGATTATGGGGCTTACCCTAGTGGTCACTGAGTTAGTACAAGAGAAAAGACTTCAATGCACTCTGTTTTCACAAACACAGGAGATAACCAGGAGACTTTCGCTTCTCAAAATTAGGGTCTGAGGGTAATGGTAATGAAACTTACTTCTTCTCCTATAACTAATTAAATGAGAAATATACTGAAGAATCAGGCACGAGTTGCCAGTCTCCCCAGTTCACTGCATCAGCTTTGGTGACCTCCTGGAGGGGAACGCTGCATCTGATGAGCTCATGCTGTGCCTGATGTCTTTTGAGCCCTGAGAAGCCAGAGCCCAAGGGGATTACCCATTGAATCCCTTCTTCGTGGAATAGCCCAGTGCAGAAAAAAGCAGCACTGTGTGGCCAATTCTACCCTCTTTACAAATCAGATACATGTGTTCTTCTGCTACAGGCTGGATCCACTTATCTAGCTGGAGATGATAGTCTGAGACAGGAGTTGGCAAACTGTCTCTGTAATGGGCCAGATAGTAAATATTTTAGACTTTTCAGGCAATGTGGTTTCTGTTGCAATTCTTGACATCTGCTATTGTAGCATGATAGCAGTCACAAACAATCTGCAAATGAATGAGGATTGATATGTTCCAATTTTTATAGAAACAAATGTAAATTTCCTATAAAATGTTTGTTTCAAAAATATTGTTTCTTGTTTGCATTTGTTCAATGTAAGTACTTTTAGCTCACATACTATACAAAAACAGGTGGCAGGGTGGACTTGTGCAGGGAGTATTTTTTATTGATGCCTAATATAAGACATCCCTGTCCAGTAGAATTTTCTGCAAAGATGTGCGATTGATTTGTGCTTTTATGTCATATTTAAAGAATATTTGTCAGCACAAGATTCCAAAGACTGGCTTTCAACTTTCCCAGAATTTTTTTGTTTTAGCTCTTATATCTAGATCAATGACATATTTCAAATTAATTTTTATTTCATAATATGAAGTAATAGTGGTCATGCTTCAATGTCTATAAATTTCTACTTATTCAAGTAACATTTGTTGAAATAAATCTGCTTTGGTATCAATAACATTTTAATATAGTACTTGTTTATAAATATTCAAGGGAATATTTTTAAAAAACAAAATTATAGACTATTTATATGAAAATTTAGGGGGTAGAATTTTTCCTAACATTTTTATTATAAAATTTTTTAAAATAAATAACATTACACACACATATGTATATGTACATATGGCAGTGTGTATACATATCTACTCTGATATCTGTCCATCCATCTATTTACACCTCAATACTTCAGTATGTATAGCACAATAACAATGGTTTTCTCCTACATAATAATAGCATTCATACTGTGGAGTTATTAATACAATAATATTATTTACTATACAGCTTTTATTTAAAATTTCCCAACTTTAAAATAATATTTTAATCACTTTTTTCTTGCAATTCACTCTCCAGTCAAGAAATAAGCACATAGTTTCAGTATCCTGTTACTTTCCATCTCCTGTAATCAAGAAGAGTCCATTTCCTCTGTTTCCTTTCAGTATGTTGATCTCTGTGAAGAGTTGAGCAATTAGTCATTTAAATTTTCCTGGGGCTCGTTTTGGGTAATTGTTTTCTAAATATTATATTCCAGTTATGACTTTGGCAAGAAAACTACATAGTATTTTGAATATTCTGCTGAATCACAGTGGTGAGGCAGGGGCACATAATGTCACATATGCCATTATTGGTTATGCTAAGATCCTCACCTAATAAGTTGGAATCTGCCAGATCTTTCCATTGAAGGGGTTCTGCTTTTTATGCGTGAATGATGAAAATCTATGGCATGGTACTTCAAGGCAGAACACCCTGTTTCCCAAGTCACACATCCAATAGTTTTATCTTTCATTAATGATCCTCATCTGACCTGATGATCTTGACCTGAATGGTTACAAATAGGTGATTTTTCTAATTTCATCATTCCTTCCGTATTTTTAAGCTAGGATTAATCTGTAATGAATATCTCTCCCATATCTTTAAATGAAGACAAACAAACTGCATGGCAATGACAAGAACTCAATAGTTTTATCCTTGCCACTACACTTGTTACCATCCCAGAAGATGTCATTTGAAATTCAATCATATGTTTATTCACAAATGCCCTGTGAACAGATACTGTGGCCATTTCCCATGTCAACAGAGACTTCAACTTTTAGTTATACTCTACACATAAGGTTGGTGAAAACTGAAGTGATGGAATAGAGAAGCAAGTGTGGACAGCCACTAGTTTCCAAGCTTGATGAAAAGGAGGACAGATTCAGAAGGTTGCATCCAAGTATCCAAGTACTCAGGACTTCAAATGTGATTGCAGGGCACTTTAGCAAGATTATTGTCATGGGCCTTAAGTTCATGACTCTTATTACTTGGTCTATCCATCTGGAAATGGTACTGCCCTTCTTTGGAACGGGATTTCCTCATCTGCACATCAAAAGATTTAACTACATGATTACCACTGTTTCTTCAACCTTCATGGCTTCTTTACAGCTCAGTTCATCTATGTCTCTTGTTTCTAG
Seq C2 exon
GGCACAACCATATTAATTTCCCTGACTTCTGTGCTACATGACAACAAAGAATTTCCCAACCCAGAGATGTTTGACCCTCATCACTTTCTGGATGAAGGTGGCAATTTTAAGAAAAGTAAATACTTCATGCCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138109-CYP2C9:NM_000771:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)