HsaINT0044289 @ hg19
Intron Retention
Gene
ENSG00000205702 | CYP2D7P1
Description
cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 [Source:HGNC Symbol;Acc:2624]
Coordinates
chr22:42537878-42538640:-
Coord C1 exon
chr22:42538480-42538640
Coord A exon
chr22:42538055-42538479
Coord C2 exon
chr22:42537878-42538054
Length
425 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CCCCGTTCTGTCTGGTGTAGGTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
GACGCCCCTTTCGCCCCAACGGTCTCTTGGACAAAGCCGTGAGCAACGTGATCGCCTCCCTCACCTGCGGGCGCCGCTTCGAGTACGACGACCCTCGCTTCCTCAGGCTGCTGGACCTAGCTCAGGAGGGACTGAAGGAGGAGTCGGGCTTCCTGCGCGAG
Seq A exon
GTGCGGAGCAAGGGTCTTTGCAGGGCGAGCTCCTGAGAGGTGCCGGGGCTGGACTGGGGCCTCCGAAGGGCAGGATTTGCGTAGATGGGTTTGGGAAAGGACATTCCAGGAGACCCCACTGTAAGAAGGGCCTGGAGGAGGAGGGGACATCTCAGACATGGTCGTGGGAGAGGTGTGCCCGGGTCAGGGGGCACCAGGAGAGGCCAAGGACTCTGTACCCCCGTCCACGTTGGAGATTTCGATTTTAGGTCTCTCCTCTGGGCAAGGAGAGAGAGGGTGGAGGCTGGCACTTGGGGAGGGACTTGGTGAGGTCAGTGGTAAGGACAGGCAGGCCCTGGGTCTTCCTGGAGATGGCTGGGGCCTGAGACTGGTCCAGATGAACGCAGAGCACAGGAGGGATTGAGACCCCGTTCTGTCTGGTGTAG
Seq C2 exon
GTGCTGAATGCTGTCCCCGTCCTCCTGCACATCCCAGCGCTGGCTGGCAAGGTCCTACGCTTCCAAAAGGCTTTCCTGACCCAGCTGGATGAGCTGCTAACTGAGCACAGGATGACCTGGGACCCAGCCCAGCCACCCCGAGACCTGACTGAGGCCTTCCTGGCAAAGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702-CYP2D7P1:NR_002570:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGCCCCAACGGTCTCTT
R:
CTTCTCCTTCTTTGCCAGGAAG
Band lengths:
331-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)