MmuINT1008063 @ mm10
Intron Retention
Gene
ENSMUSG00000068085 | Cyp2d11
Description
cytochrome P450, family 2, subfamily d, polypeptide 11 [Source:MGI Symbol;Acc:MGI:88603]
Coordinates
chr15:82390893-82391864:-
Coord C1 exon
chr15:82391704-82391864
Coord A exon
chr15:82391070-82391703
Coord C2 exon
chr15:82390893-82391069
Length
634 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
TTCCTCTGTGTCTCTCACAGGTA
3' ss Score
12.87
Exon sequences
Seq C1 exon
GGCAGTCCATCAATCCCAACACCATGCTGAACAACGCTGTGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTAAAAATGCTGAAAGAATGTTTCACAGAAATCTCTGGCTTCATTCCTGGG
Seq A exon
GTAGGAGGTTCAGGGCAGCCTACAGAGACACTTCTGTGCAGTCCATCTTCCCTGAGGGAAGCTATGTGCCAAGGCTGTGAGAAAGACCTTCTGGGGGTCAACTGCAGGAGGATATGCCTGTTGACATCTGGTCAAGGACATGAGGGGAGAAGTGGACCAAAATCAGGATTTCTGGAAAGGGGGAGAACCTGGGCCTTCTGTTTGCATGGAAGACATAAAACCTGTGGTTATAGTTGGGGTAGAATGTTGCTTTGTTCACCTAGGGCTGAGAGAGCCTCTAAGTGTCTCTTGCAAATTTAACAACTGAAGAGGAGGCAGAGGACAGGTAGGGACAAACAGGCTCTGGGTCCATTGCGAAGGAAGATGGTAACTGAGCCTGGTCCAGGTGGATAAGGAGCATCAATAGCACTGAGGAACCAGTCAAATGGTGAGTGGGTAAGGAGCTCGCCAAGCAAGCCAGCCAACCCCAGTTTGATGTCTGAGACTCATGTGGGATAGAGACAATTGACTCCACACACTGTCCTATCATTTGCTTCCAAACACCGTGGCTCATAAGCACCATACATGATCATGATTCACTAATAGTACATTTCATGAAGAGGAACCTCTGAGATTTCCTCTGTGTCTCTCACAG
Seq C2 exon
GTACTTAATGAGTTCCCAATATTCCTGCGCATCCCAGGGCTGGCTGACATGGTCTTCCAAGGTCAGAAGTCCTTCATGGCCATACTGGATAACCTGTTGACTGAGAATAGGACCACCTGGGACCCTGACCAGCCACCCCGAAATTTGACTGATGCCTTCCTGGCAGAGATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068085:ENSMUST00000170255:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.153
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTCCATCAATCCCAACA
R:
CTTTTCTATCTCTGCCAGGAAGG
Band lengths:
338-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types