HsaINT0044466 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15806971-15807322:+
Coord C1 exon
chr19:15806971-15807035
Coord A exon
chr19:15807036-15807239
Coord C2 exon
chr19:15807240-15807322
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
CTTCTTTGTCTCACCTGCAGGTC
3' ss Score
12.45
Exon sequences
Seq C1 exon
GCATTACCTGCCTCATCGATATTATAGGGGTCCATCACAACCCAACTGTGTGGCCGGATCCTGAG
Seq A exon
GTGCTGCCTTCCCCATTCACCACCACCACCCCCATCCTCTACTTTTGTGTGTGTGTGTGTGAATTCCAAGGTTCCTAGTGGAGGGGGCAGGGTTTTGATGAGGAAAATCCAACATCACCTCACCCCAAAACACACACAAGTGTCTCTCCAAGGCTGCTGGACATAGGAAATCCCACTGGCAAACCTTCTTTGTCTCACCTGCAG
Seq C2 exon
GTCTACGACCCCTTCCGCTTTGACCCAGAGAACAGCAAGGGGAGGTCACCTCTGGCTTTTATTCCTTTCTCCGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACCTGCCTCATCGATA
R:
CTGGGCCCTGCGGAGAAAG
Band lengths:
148-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)