MmuINT0045383 @ mm10
Intron Retention
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32702126-32702414:+
Coord C1 exon
chr17:32702126-32702190
Coord A exon
chr17:32702191-32702331
Coord C2 exon
chr17:32702332-32702414
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTC
5' ss Score
6.43
3' ss Seq
GATGCCACTTTCTCTTTCAGGTT
3' ss Score
11.77
Exon sequences
Seq C1 exon
GTGTTATCTGCATCATCAATATTTTCGCGACCCATCACAACCCAACTGTGTGGCCTGACCCTGAG
Seq A exon
GTACTCTAGCTCCCTTCTCCCATCCTTTTTCATCACAATGATCCTAGAGGAAGGAGCAGTTTTGGGCTGGGGAAATCAGAACTTACTATCCTTCGCACATAACGGGATTTTGTCTCTGGCTGATGCCACTTTCTCTTTCAG
Seq C2 exon
GTTTATGACCCCTTCCGCTTTGACCCAGAGAATATCAAGGACAGGTCACCTCTGGCTTTTATTCCCTTCTCCGCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424:ENSMUST00000168171:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCTGCATCATCAATATTTTCGC
R:
CTGGGCCCAGCGGAGAAG
Band lengths:
146-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types