BtaINT0005472 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8565492-8565783:+
Coord C1 exon
chr7:8565492-8565556
Coord A exon
chr7:8565557-8565700
Coord C2 exon
chr7:8565701-8565783
Length
144 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATA
5' ss Score
3.13
3' ss Seq
CTGTCTTGTCTTGCCCCCAGGTC
3' ss Score
12.64
Exon sequences
Seq C1 exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATCTGTGTGGCCAGATCCTGAG
Seq A exon
GTGATACCTCCCCCACCCCCCACCTCCCTTATCCTTATCCACTCCCCTCAGGGGACCCAGGGTTCTGACTTCTGGCAAATCAGCCATCACCTCCCCCTACTATACAAACACCTGCCAAGTAGCCCTGTCTTGTCTTGCCCCCAG
Seq C2 exon
GTCTTTGATCCCTTCCGCTTCGACCCAGAAAACATCAAAGGGAGGTCACCTGTGGCTTTTGTTCCCTTCTCCGTGGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTATCTGCCTCATCAGCA
R:
CTGGGCCCCACGGAGAAG
Band lengths:
148-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]