RnoINT0044578 @ rn6
Intron Retention
Gene
ENSRNOG00000048450 | Cyp4f37
Description
cytochrome P450, family 4, subfamily f, polypeptide 37 [Source:RGD Symbol;Acc:1585102]
Coordinates
chr7:14613948-14614254:+
Coord C1 exon
chr7:14613948-14614012
Coord A exon
chr7:14614013-14614171
Coord C2 exon
chr7:14614172-14614254
Length
159 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CATCTTGTCTCTCCCCTCAGGTC
3' ss Score
12.89
Exon sequences
Seq C1 exon
GGAACATCTGTGTCATCAGCATCTTTGGTATTCATCACAATCCTTCAGTGTGGCCAGACCCTGAG
Seq A exon
GTAGGTGCTGCTCCAGGCATTTCTGGGACCTGGGGAGTGGGTGTGGCCTAAACCTGGAAACAAGCTGTCACTTCTGTCTCCCTGTCCACTCCTCTTCTGGGGCTAGCTGGGCGTGCGCAGAGAAGCAACCTAGAAACCTCATCTTGTCTCTCCCCTCAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTTGACCCAGAAAATCGTCAGAAGAGGTCACCTCTGTCTTTTATTCCCTTCTCCGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048450:ENSRNOT00000060210:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.7=100)
A:
NA
C2:
PF0006717=p450=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTGTGTCATCAGCA
R:
CTGGGCCCTGCGGAGAAG
Band lengths:
148-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]