MmuINT0045443 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:32812657-32812931:+
Coord C1 exon
chr17:32812657-32812721
Coord A exon
chr17:32812722-32812848
Coord C2 exon
chr17:32812849-32812931
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
CCATGGCTAGTCTCTTGCAGGTC
3' ss Score
3.98
Exon sequences
Seq C1 exon
GTGTCATCTGCATCATCAATATTTTTGGAACCCATCACAACCCAACTGTGTGGCGGGACCCTGAG
Seq A exon
GTGCGCTGTGTCTGCGTTCTTGGTCTCCCCCAGTGGCCCCAGGATATCAGATTCCTAGCACATTTAAGACTCTGTCTCTGGCTGTGCTGCTAGATGCCACCCATTCACCATGGCTAGTCTCTTGCAG
Seq C2 exon
GTCTATGACCCCTTCCGTTTTGATCCAGAGAACATCCAGGCTAGATCACCTCTGTCATTTATTCCCTTCTCAGCGGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp4f40:NM_001101588:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCTGCATCATCAATATTTTTGG
R:
CTTGGCCCCGCTGAGAAG
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: