BtaINT0007896 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8531621-8531955:+
Coord C1 exon
chr7:8531621-8531685
Coord A exon
chr7:8531686-8531872
Coord C2 exon
chr7:8531873-8531955
Length
187 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
CTGTCTTGTCTTGCCCCCAGGTC
3' ss Score
12.64
Exon sequences
Seq C1 exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATATGTGTGGCCAGACCCTGAG
Seq A exon
GTGATGCCTCCACCACGCCATACCTCCATCATCCCTGTCCATTCCCTTTGGGGGACCCAAAGGCAACTACAGAATTCTGATTGGCCAATCAGACATCACTTCCCTCCCATTATACACACATCTGCCTCTCTAAAGATGGACGTTCTGGGAGATACCACCCAGTAACCCTGTCTTGTCTTGCCCCCAG
Seq C2 exon
GTCTATGACCCCTTGCGCTTCAAGCCAGAAAACATCAAGGGGAGGTCACCGCTGGCTTTTATCCCCTTCTCAGCAGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319:ENSBTAT00000036382:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTATCTGCCTCATCAGCA
R:
CTGGGACCTGCTGAGAAGGG
Band lengths:
148-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]