RnoINT0044614 @ rn6
Intron Retention
Gene
ENSRNOG00000042496 | Cyp4f5
Description
cytochrome P450, family 4, subfamily f, polypeptide 5 [Source:RGD Symbol;Acc:708364]
Coordinates
chr7:14572866-14573173:+
Coord C1 exon
chr7:14572866-14572930
Coord A exon
chr7:14572931-14573090
Coord C2 exon
chr7:14573091-14573173
Length
160 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CATCTTGTCTCTCCCCTCAGGTC
3' ss Score
12.89
Exon sequences
Seq C1 exon
GGAACATCTGTGTCATCAGCATCTTTGGTATTCATCACAATCCTTCAGTGTGGCCAGACCCTGAG
Seq A exon
GTGGGTGCTGCTCCAGGCATTTTCGGGACCTGGGTAGGGGTGTGTGGCCTAAACCTGGAAACAAGCTGTCACTTCTGTCTCCCTGTCCACTCCTCTTTTGGGGCTAGCTGGGTGTGCGCAGAGAAGCAATCTAGAAACCTCATCTTGTCTCTCCCCTCAG
Seq C2 exon
GTCTTCGACCCCTTCCGCTTTGACTCAGAAAATCGTCAGAAGAGGTCACCTCTGTCTTTTATTCCCTTCTCCGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042496:ENSRNOT00000007428:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTGTGTCATCAGCA
R:
CTGGGCCCTGCGGAGAAG
Band lengths:
148-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]