MmuINT0071533 @ mm9
Intron Retention
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32771374-32771685:+
Coord C1 exon
chr17:32771374-32771438
Coord A exon
chr17:32771439-32771602
Coord C2 exon
chr17:32771603-32771685
Length
164 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CATCTTGCCCCTCCCCTCAGGTC
3' ss Score
11.83
Exon sequences
Seq C1 exon
GGAACATCTGTGTCATCAGCATCTTTGGTATTCATCACAATCCATCAGTCTGGCCAGACCCTGAG
Seq A exon
GTGGGGGCTCCTCCAGGCATTGCTGGGAGGGACATGGGAAGGGGATGTAGCCCCAACCTGGAAACAAGAAGCTGTCACCCCTGTCTCTATGTCTACTTTTGGGGGGCTGGCTGGGTGTGCGCAAAGAAGCAACCTAGAAAGCCTCATCTTGCCCCTCCCCTCAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTTGACCCAGAAAACGCACACAAGAGGCCTCCTCTGGCTTTTATTCCCTTTTCTGCCGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-Gm9705:NM_001100187:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTGTGTCATCAGCA
R:
CTGGGCCCGGCAGAAAAG
Band lengths:
148-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: