HsaINT0044524 @ hg19
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450, family 4, subfamily F, polypeptide 8 [Source:HGNC Symbol;Acc:2648]
Coordinates
chr19:15739341-15739653:+
Coord C1 exon
chr19:15739341-15739405
Coord A exon
chr19:15739406-15739570
Coord C2 exon
chr19:15739571-15739653
Length
165 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
TTAACTTGCCTCCACCCCAGGTC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGAATGTCTGTAACATCAACATCTTCGCAATCCATCACAACCCCTCAGTCTGGCCAGACCCTGAG
Seq A exon
GTGCTGCCCCTCCCTGTTTCTCCATCCCCCGGGCCTGGTCGGGGGAGGGGTCTTGTCCCGGAAAACCAGATACTCCCTCTCTACTCCACCCACATCTGTTTTATGTGGGGGTGGCTGGGTGTCCTGAGAGGCCCCATCAGCAGCCTTAACTTGCCTCCACCCCAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACGCCCAGAAGAGGTCACCTATGGCTTTTATTCCTTTCTCGGCGGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-CYP4F8:NM_007253:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTAACATCAACATCTTCGCA
R:
CCCCGCCGAGAAAGGAATAAA
Band lengths:
139-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)