HsaINT0044524 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15628531-15628843:+
Coord C1 exon
chr19:15628531-15628595
Coord A exon
chr19:15628596-15628760
Coord C2 exon
chr19:15628761-15628843
Length
165 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
TTAACTTGCCTCCACCCCAGGTC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGAATGTCTGTAACATCAACATCTTCGCAATCCATCACAACCCCTCAGTCTGGCCAGACCCTGAG
Seq A exon
GTGCTGCCCCTCCCTGTTTCTCCATCCCCCGGGCCTGGTCGGGGGAGGGGTCTTGTCCCGGAAAACCAGATACTCCCTCTCTACTCCACCCACATCTGTTTTATGTGGGGGTGGCTGGGTGTCCTGAGAGGCCCCATCAGCAGCCTTAACTTGCCTCCACCCCAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACGCCCAGAAGAGGTCACCTATGGCTTTTATTCCTTTCTCGGCGGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(26.2=100)
A:
NA
C2:
PF0006717=p450=FE(35.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTAACATCAACATCTTCGCA
R:
CCCCGCCGAGAAAGGAATAAA
Band lengths:
139-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development