BtaEX6037215 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8531393-8531955:+
Coord C1 exon
chr7:8531393-8531526
Coord A exon
chr7:8531621-8531685
Coord C2 exon
chr7:8531873-8531955
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCTCCTCTCCCACAGGTG
3' ss Score
12.44
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GGACGACCTGGCTCAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGTTGCACCCCCCAGTCACGGTCATCTCCCGCAGCTGTACCCAGGACATCACGCTTCCAGATGGCCGGGTCATCCCCAAAG
Seq A exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATATGTGTGGCCAGACCCTGAG
Seq C2 exon
GTCTATGACCCCTTGCGCTTCAAGCCAGAAAACATCAAGGGGAGGTCACCGCTGGCTTTTATCCCCTTCTCAGCAGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319-'12-15,'12-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
ATAAAAGCCAGCGGTGACCTC
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]