BtaEX0001277 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8528394-8531685:+
Coord C1 exon
chr7:8528394-8528460
Coord A exon
chr7:8528644-8528773
Coord C2 exon
chr7:8531621-8531685
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGGATGCTCCTCAGGCC
3' ss Score
7.06
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GATGAAGATGGGAAGGGATTATCAGACGAAGACATCCGAGCTGAAGCTGACACCTTCATGTTTGAAG
Seq A exon
GCCATGACACCACAGCCAGTGGCCTCTCCTGGGTCCTGTACAACCTTGCAAAACACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAGCTCCTGAAGGACCGTGAGTCTAAAGAGATTGAATG
Seq C2 exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATATGTGTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
PF0006717=p450=FE(9.3=100)
C2:
PF0006717=p450=FE(4.5=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGGAAGGGATTATCAGAC
R:
CTCAGGGTCTGGCCACACATA
Band lengths:
130-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development