Special

BtaEX0001278 @ bosTau6

Exon Skipping

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8528644-8531685:+
Coord C1 exon
chr7:8528644-8528773
Coord A exon
chr7:8531393-8531526
Coord C2 exon
chr7:8531621-8531685
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGGGGTTTCCTTAGGGA
3' ss Score
6.92
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
GCCATGACACCACAGCCAGTGGCCTCTCCTGGGTCCTGTACAACCTTGCAAAACACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAGCTCCTGAAGGACCGTGAGTCTAAAGAGATTGAATG
Seq A exon
GGACGACCTGGCTCAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGTTGCACCCCCCAGTCACGGTCATCTCCCGCAGCTGTACCCAGGACATCACGCTTCCAGATGGCCGGGTCATCCCCAAAG
Seq C2 exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATATGTGTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=FE(9.3=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGACACCACAGCCAG
R:
TCAGGGTCTGGCCACACATAT
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development