RnoEX6030768 @ rn6
Exon Skipping
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14877776-14879378:+
Coord C1 exon
chr7:14877776-14877905
Coord A exon
chr7:14879103-14879236
Coord C2 exon
chr7:14879314-14879378
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGGTGTGCTTCTCAGGGA
3' ss Score
8.8
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GCCACGACACCACAGCCAGTGGGCTCTCCTGGATCCTGTACAACCTGGCGAAGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAACTCCTGAGGGATCGTGATTCTGAAGAGATTGAATG
Seq A exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGACTGCATCCCCCAGTCACAATGGTCTCCCGATGCTGCACACAGGACATTTCTCTGCCAGACGGCCGTGTCATTCCTAAAG
Seq C2 exon
GTATCATCTGCATCATCAATATTTTTGCAACCCATCACAACCCAACTGTGTGGCAGGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.3=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGACACCACAGCCAG
R:
CTCAGGGTCCTGCCACACAG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]