RnoEX6030769 @ rn6
Exon Skipping
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14877529-14879236:+
Coord C1 exon
chr7:14877529-14877595
Coord A exon
chr7:14877776-14877905
Coord C2 exon
chr7:14879103-14879236
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTACCTATCTGCTCTTCAGGCC
3' ss Score
8.23
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GATGAAGACGGAAAGGAGCTGTCAGATGAGGACATCCGAGCGGAGGCTGACACCTTCATGTTTGAGG
Seq A exon
GCCACGACACCACAGCCAGTGGGCTCTCCTGGATCCTGTACAACCTGGCGAAGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAACTCCTGAGGGATCGTGATTCTGAAGAGATTGAATG
Seq C2 exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGACTGCATCCCCCAGTCACAATGGTCTCCCGATGCTGCACACAGGACATTTCTCTGCCAGACGGCCGTGTCATTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
PF0006717=p450=FE(9.3=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGAAAGGAGCTGTCAGA
R:
CTTTAGGAATGACACGGCCGT
Band lengths:
196-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]