DreEX6071104 @ danRer10
Exon Skipping
Gene
ENSDARG00000053530 | cyp4f3
Description
cytochrome P450, family 4, subfamily F, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-070410-108]
Coordinates
chr12:48572068-48574111:-
Coord C1 exon
chr12:48574055-48574111
Coord A exon
chr12:48572372-48572501
Coord C2 exon
chr12:48572068-48572201
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTCTCCTGCAGGTC
3' ss Score
13.26
5' ss Seq
GTGGTCAGA
5' ss Score
1.29
Exon sequences
Seq C1 exon
GTGAAGGCCTGACGAATGAGGAAATCAAAGCCCATGCAGATATGTTCATGTTTGCAG
Seq A exon
GTCATGACACCACCGCCAGCGCTCTCTCCTGGATCTTCTACAATCTGGCCATGAATCAGGATTATCAGGAGCGCTGCCGAGCTGAAGTCAGAGATCTGCTGGCAGACAGAGACACACACACCATCGGGTG
Seq C2 exon
GGAGGATCTGAGTCAGCTGACCTTCACCACCATGTGCATCAAGGAGAGTCTGAGGCTTCATTCACCCGTCCTGGCGCTCACCCGATACTACTCTCAGAACATGAAGACGCCAGGAGACTGCGTTATCCCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053530-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.0=100)
A:
PF0006717=p450=FE(9.1=100)
C2:
PF0006717=p450=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGCCTGACGAATGAGG
R:
CGTGTGGGATAACGCAGTCTC
Band lengths:
191-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]