BtaEX6037229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8632291-8634267:-
Coord C1 exon
chr7:8634201-8634267
Coord A exon
chr7:8633960-8634089
Coord C2 exon
chr7:8632291-8632424
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTTATCTGCCTGCAGGTC
3' ss Score
9.46
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GATGAAGATGGAAAGGAACTCTCAGACGAGGACATCCGAGCTGAGGCAGACACATTCATGTTTGAGG
Seq A exon
GTCATGACACAACTTCCAGTGGGCTGTCATGGGTACTGTTCAACTTGGCCAAGTATCCAGAGTACCAGGAGAAGTGCCGAGAAGAGATCCAGGAAGTCATGAAAGGCCGGGAGCTGGAGGAACTGGAGTG
Seq C2 exon
GGACGACCTGACCCAACTGCCCTTCACCACCATGTGCATCAAGGAGAGCCTCCGCCAGTTCCCACCTGTGACCCTGGTCTCCCGCCGCTGCACGGAGGACATCAAGCTCCCAGACGGACGCATCATCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAAAGGAACTCTCAGACGA
R:
CTTTGGGGATGATGCGTCCG
Band lengths:
196-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]