RnoEX6030758 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14505435-14510745:+
Coord C1 exon
chr7:14505435-14505501
Coord A exon
chr7:14505613-14505742
Coord C2 exon
chr7:14510612-14510745
Length
130 bp
Sequences
Splice sites
3' ss Seq
CAACATATGTCTGCCCACAGGTC
3' ss Score
9.96
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGAAGAGGGGAAAGAATTATCTGACGAAGACATCCGGGCTGAGGCGGATACGTTCATGTTTGAGG
Seq A exon
GTCATGACACAACATCTAGTGGGCTGTCGTGGGCGCTGTTCAACCTGGCGAAGTATCCGGAGTACCAGGACAAGTGCCGGGAAGAGATCCAAGAAGTCATGAAAGGCCGAGAGCTGGAAGAGCTGGACTG
Seq C2 exon
GGATGACCTGACGCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCGCCCGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCCGACGGACGCATCATTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGGAAAGAATTATCTGACGA
R:
TTTGGGAATGATGCGTCCGTC
Band lengths:
195-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]