HsaEX6093618 @ hg19
Exon Skipping
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15654782-15659052:+
Coord C1 exon
chr19:15654782-15654848
Coord A exon
chr19:15654961-15655090
Coord C2 exon
chr19:15658919-15659052
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATACCCTCATCTCCCTGCAGGTC
3' ss Score
11.79
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GATGAAGATGGAAAGGAACTGTCAGACGAGGATATCCGAGCCGAAGCAGACACCTTCATGTTTGAGG
Seq A exon
GTCACGACACAACATCCAGTGGGATCTCTTGGATGCTGTTCAATTTGGCAAAGTATCCGGAATACCAGGAGAAATGCCGAGAAGAGATTCAGGAAGTCATGAAAGGCCGGGAGCTGGAGGAGCTGGAGTG
Seq C2 exon
GGACGATCTGACTCAGCTGCCCTTTACAACTATGTGCATTAAGGAGAGCCTGCGCCAGTACCCACCTGTCACTCTTGTCTCTCGCCAATGCACGGAGGACATCAAGCTCCCAGATGGGCGCATCATCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAAGGAACTGTCAGACGA
R:
CTTTGGGGATGATGCGCCC
Band lengths:
194-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)