HsaEX0018334 @ hg38
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15628302-15628843:+
Coord C1 exon
chr19:15628302-15628435
Coord A exon
chr19:15628531-15628595
Coord C2 exon
chr19:15628761-15628843
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTCCTGCACGACAGGGA
3' ss Score
8.28
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGTTGCCCTTCCTGACCATGTGCCTGAAGGAGAGCCTGCGGTTGCATCCCCCAATCCCTACATTCGCCCGCGGCTGCACCCAGGACGTGGTGCTCCCAGACAGCCGAGTCATCCCCAAAG
Seq A exon
GGAATGTCTGTAACATCAACATCTTCGCAATCCATCACAACCCCTCAGTCTGGCCAGACCCTGAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACGCCCAGAAGAGGTCACCTATGGCTTTTATTCCTTTCTCGGCGGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(26.2=100)
C2:
PF0006717=p450=FE(35.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCCCTTCCTGACCATG
R:
GTGACCTCTTCTGGGCGTTTT
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development