BtaEX0001212 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8467760-8468897:-
Coord C1 exon
chr7:8468764-8468897
Coord A exon
chr7:8468604-8468668
Coord C2 exon
chr7:8467760-8467925
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTCTTGTTCCACAGGTG
3' ss Score
13.72
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGATTGCACCCCCCGGTCTCGGTCATCTCCCGCCGCTATGCCCAGGACACTTTGCTTCCAGATGGCCGGGTCATCCCCAAAG
Seq A exon
GTGTTATCTGCCTCATCAATATTATTGGGACCCACCACAACCCATCTGTGTGGCCAGACCCTGAG
Seq C2 exon
GAACTGCATCGGGCAGACATTTGCCATGACGGAGATGAAGGTGGTCCTGGCGCTCACGCTACTGCGCTTCCGCGTCCTGCCTGGTGAGGAGCCTCGCCGGAAGCCAGAGCTGATCCTGCGAGCGGAGGGCGGACTTTGGCTGCGGGTGGAGCCGCTGAGCGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=PD(10.4=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCCCTTCCTGACCATG
R:
AGGACCACCTTCATCTCCGTC
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development