MmuEX6076808 @ mm10
Exon Skipping
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32489620-32491889:+
Coord C1 exon
chr17:32489620-32489753
Coord A exon
chr17:32491143-32491207
Coord C2 exon
chr17:32491807-32491889
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCGTCCCCCCCTCAGGAA
3' ss Score
11.48
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGATGACCTCACTCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCACCTGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCAGATGGACGTGTCATCCCCAAAG
Seq A exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACCACAACCCCATAGTGTGGCCTGACTCTAAG
Seq C2 exon
GTATACAATCCTTACCGTTTTGACCCGGACACCCCACAGCAGCGCTCTCCACTGGCCTTTGTACCTTTCTCAGCAGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126-'3-12,'3-10,14-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCACCACCATGTGTAT
R:
GTACAAAGGCCAGTGGAGAGC
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types