MmuEX6076808 @ mm9
Exon Skipping
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32626565-32628834:+
Coord C1 exon
chr17:32626565-32626698
Coord A exon
chr17:32628088-32628152
Coord C2 exon
chr17:32628752-32628834
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCGTCCCCCCCTCAGGAA
3' ss Score
11.48
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGATGACCTCACTCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCACCTGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCAGATGGACGTGTCATCCCCAAAG
Seq A exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACCACAACCCCATAGTGTGGCCTGACTCTAAG
Seq C2 exon
GTATACAATCCTTACCGTTTTGACCCGGACACCCCACAGCAGCGCTCTCCACTGGCCTTTGTACCTTTCTCAGCAGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCACCACCATGTGTAT
R:
GTACAAAGGCCAGTGGAGAGC
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: