HsaINT0044478 @ hg19
Intron Retention
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450, family 4, subfamily F, polypeptide 2 [Source:HGNC Symbol;Acc:2645]
Coordinates
chr19:15990156-15990478:-
Coord C1 exon
chr19:15990414-15990478
Coord A exon
chr19:15990239-15990413
Coord C2 exon
chr19:15990156-15990238
Length
175 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CTTCTTGGTCTCACCTCCAGGTC
3' ss Score
10.96
Exon sequences
Seq C1 exon
GCATTATCTGCCTCATCAGTGTTTTCGGAACCCATCACAACCCAGCTGTGTGGCCGGACCCTGAG
Seq A exon
GTGCGGGGCCCCTCTCTCTGTTTTTGTCCATTCCAAGGCTCCTAGAGGAGGGGGCAGGGTTTTGATCAGGAGTATCCAACATCACCTCCCTCAAAGACACACACAACTGTCTGTCTCTCCAAGGCTGGCGGACTGGGAGACCCCACCCAACAACCCTTCTTGGTCTCACCTCCAG
Seq C2 exon
GTCTACGACCCCTTTCGCTTTGACCCAGAGAACATCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCGGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115-CYP4F2:NM_001082:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=17.9),PF126013=Rubi_NSP_C=PU(70.0=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTATCTGCCTCATCAGTGT
R:
GCCGAGAAGGGAATAAAAGCCA
Band lengths:
139-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)