HsaINT0044483 @ hg19
Intron Retention
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450, family 4, subfamily F, polypeptide 2 [Source:HGNC Symbol;Acc:2645]
Coordinates
chr19:16001122-16003246:-
Coord C1 exon
chr19:16003119-16003246
Coord A exon
chr19:16001244-16003118
Coord C2 exon
chr19:16001122-16001243
Length
1875 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTGTCCCCTTCTCTGGCTAGGCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCCGCCACCGTCGGATGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATGAAGATTTTCAATGAGAGTGTGAACATCATGCAC
Seq A exon
GTGAGTTATTTGAAGCCAAGGTCCCACTTGCAGCCTTGGGGTGAAAGGACAACAGAGAGATCTAGTCTGGAGTTTTGGCTCTGCTGGGTGCCATTGGGCCATTGCTCTTTCTCACTGAGCCTTGGTTTCCTCATCTGTAAAATGGGGATAATAATCCCTACTTAAAAGATGGTCAGAGTAATGTAATGGAGTCACGTCTCTGGTGCATAGCAGGTGCCCAGAAGGTGTCTGTTTCTATGTTTCCATCACCAAAGCCCTGTAAACACAAGAGGGTCATGACAACAATTTCATAGTAGCTGTTGCTGATAAGAAACCACCTGAAAACTCATTGGTTTAAACCAATAAGTGTTTATGTTTGCTAATAAGTCTTTGGGACAGTTGGCAGGTTCTTCTGTATATGGAAGGGACCACTCATGGTACATGAGCAGCTGGGGGTCAGGTAGGCAGCCTTGCAGGTGTTGACTGAATTCTGCCACATGTTTGGGTTTTGGCTGGGACATGTTTGGGTTCTCTCACGTGTCTAGGTTTGGCCTCATCTGGGACCCCTGGATGTTCCTCCCTATGATTGTCTCCTTCCAGAAGGCGCGCCATGGTTCACAATGCAGGCAGGGTTCCAAGGAGTAAGACAAGGCTTAGCTTCGTTAGTTATTAACTCATCATTTTCACCACATTGTATTTTGACATCGAAAGCCAAAAGTCCAACACAGAATCAAAGGCAGGGGGATAAAATAGGCTCTGTCTATTAATGGGAGTTGCTGAAAAATCACATTGCAAAGGGTGTGGATATGGCAGGAAGGGAAGAATTGTGGCAAAGGTTTTGCGAAGTATCTAGGATTTTTTTTTTAACTTGCAAATTGATAAGTTAGCTTGTTACTGTTTCATAAATTCTTCCAGAAGGACGAGAGACTCCTGGGTCAGAGACAAAGGATAGTTTACTACTCATGACACAGACAGCAGCATGTGTTTCTTGTTAGATTGCCTTTTTTCCCTCCAAGCTTCCCAAATCCCATGGGCTGACACAGGTGGGCTTCTATAAGTGCCTGCTGACATCATATATTGCATTACAGAAGAGGAGCTTTAAGCTTAGGGAATCTGCTTTTATAGAAAGCAAAAGCAACATGTCTAGAGGGAGTCTTTACCTTATCCCTCAAAGTTTTTCTTCGCAAACACAACTCTGAGAAATTTTCCATGTTAAGGACATCAGTGTCTTGCATTCATGACATGCCCAGAAAGAATGCTCAGGACTCAACGAAGGACTACCTCCCCCAAAACAGGGATATTTTTGAAATCAATTTATAACAATGCAGACGGGGAAATCCAACATTTATTGATCACATACCATATGCCAGAAACAATGCCATGTGCCCATTCCATGATACGAGTATGTATTGTCTAATTTGATTTTAACAGCTCTGCGAAGGAGAGATTATGTATTTTTGCCCCATGGTAGATGATGAAACTGCAGGTCTGAGAGATTAGGGAACTAACCCAAGTTCACCCAGCTAATAAGTGAGCATGGCGAGGTGGAGCAGAGTTTCTAATGTGAATTATATGGCTCCAAAGCACATCATCTTAACTGTTTCTGAAGATTTGACAGGCAGGATATAGGGGAGGGTAATGAGTTGACTAATGGCACACAGAGCACAGGGGACAGAGCTGGAACTTGAACCTAGTTCTCCTAACTCCCAATCTTGGGTCTTCATCTCTTAATAGTAACAGCTTTTGTTTGCACCATAACCTGGTGCTCCCTGGGGAGGGGTCCCTGGGGAGAAGATGAAGAGGCTTATTCTGGGGAGCCCATCTTGGCAGTTGGGGTTGGAGAGGTGCTCAAGGGAGCAAGGAGCCTGCCCCAGCTCTGTCCCCTTCTCTGGCTAG
Seq C2 exon
GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCTGTTTGGATATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTACAGAAATGTGTCTTCAGCTTTGACAGCCATTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115-CYP4F2:NM_001082:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(14.5=96.2)
A:
NA
C2:
PF0006717=p450=FE(23.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGGCTCCTGCTGA
R:
CTGTCAAAGCTGAAGACACATT
Band lengths:
238-2113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)