HsaINT0044497 @ hg19
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15648346-15648804:+
Coord C1 exon
chr19:15648346-15648473
Coord A exon
chr19:15648474-15648682
Coord C2 exon
chr19:15648683-15648804
Length
209 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ACCATGTATCTCTCTTCCAGGCT
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGGATGGGCTGCTGCTCAGCAAAGGTGACAAGTGGAGCCGGCACCGTCGCCTGCTGACACCCGCCTTCCACTTTGACATCCTGAAGCCTTACATGAAGATCTTCAACCAGAGCGCTGACATTATGCAT
Seq A exon
GTGAGTCCTAAGGCTTTGAGGGAAGAGGGTGTCTTGGGAGTGAGGCTGGTCCAGGCTCCAACTCATGCATGGGCAAGCCATGTGATGTCAGGAGCCCTCACTGACTTTATCTATAAAATGAGCTTGTAGTGAAAACGCAGTCGGGTCCTTGTTAGGCTGACTCCCTCTCTGTGGTTTCCATGCACAGTCACCATGTATCTCTCTTCCAG
Seq C2 exon
GCTAAATGGCGGCATCTGGCAGAGGGCTCAGCGGTCTCCCTTGATATGTTTGAGCATATCAGCCTCATGACCCTGGACAGTCTTCAGAAATGTGTCTTCAGCTACAACAGCAACTGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-CYP4F22:NM_173483:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
NA
C2:
PF0006717=p450=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGCAAAGGTGACAAGT
R:
TCTTGGCAGTTGCTGTTGTAG
Band lengths:
238-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)