HsaINT0044517 @ hg19
Intron Retention
Gene
ENSG00000228314 | CYP4F3
Description
cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene [Source:HGNC Symbol;Acc:2647]
Coordinates
chr19:15758007-15760091:+
Coord C1 exon
chr19:15758007-15758134
Coord A exon
chr19:15758135-15759969
Coord C2 exon
chr19:15759970-15760091
Length
1835 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGTCCCCTTCTCTGGCTAGGCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGAAAAGTGGAGCCGCCACCGTCGGATGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATGAAGATTTTCAATGAGAGTGTGAACATCATGCAT
Seq A exon
GTGAGTTATTTGAAGCCAAGGTCCCAGCTGCAGCCTTTGGTTGGGGGGAACCACAGACAGATCTAGTCTGGAATTTTGGCTCTGCTGGGTGCCTCTGGGCCATTGTCTTCCTCTCTGAGCTTTGGTTTCCTCATCTGTAAAATCCCTACTTAAAAGAAGGTCAAGGTGATGTAGTGGAGTCATGTCTCTGGCGCATAGTAGGTGCCCAGAAGGTGTCTGTTTCTATGTTCGCGTCACCCGAACCCTGTAAACTCAAGAGGGTAATGACAACAATTGCATAATAGCTGTTGCTGATAAGAAACAACCTGAAAACTCATTGGTTTAAACCAATAAAGGTTTATGAATCCTGATAAGTCTGTGGGACAGTTCGTGGATTCTTCTGGATGTGGATGGAAGGGATCAGTCATGGTACATGAGCAGCCTGGGGTCAGGTAGGCAGCCTTGCTGGTGTTGGCTGAGTTCTCTCACATGTTTGGGTTTTGGCTGGCTTCAGACCGATACAGATGGCCTCAGCTTAGACCCCTGGATGTTCCTCCATCTGATTCTCTCCCTCCAGAAGGAGTCCCATGGTTTACAATACAGATAGGGTTCCAGGGAATAAGATGAGGCTTAGCTTCATTAGTTATCACCTCATCATTTTTACCACATTGTATTTTGACATCAAAAGCCAATAGTCCAACACGGAATCAATGGCAGGGGGTAAAATAGGCTCTGTCTATTATTGGGAGTTGCTGAAAAAGCACATTGCAAAGGGTGTGGATATGGGGAGAAGGGAAGAATTGGGGCGAAGGTTTTGTGAAGTGTTTAGAATTTTTTAACTTTAAAATTGATGTTAAGCTAGTTACTGTTTCATAAATTATTCTGGAAGAACAAGAAACTCCTGGGTCAGAGACAAAGGATAGTTTTACTACTCATGACACAGAGAGCAGCATGTGTTGCTTGTTAGATTGCACTTCTTCTCCAAGCCTCTCAAATCCCATGGGCTGACACAAGTGGGCTTCTATAAATGCCTGCTGACATCATATATTGCATTACAGGGAAGGGGCATTAGGCTTAGGAATCTGTTTTTATAGCAAGCAGAAGCAGCATATCCAGGGGGTGTCCCTTATCCTCAAAGTTATTTTCTGCAAACACAACTCTGAGAAATTTTTCAAGTTAAGAACATCAGCGTGTTGCATTTGTGACATGCCCAGAAAGGGTGCTCAGGACTCATGGAGGACTACCTCTACAAACCTAGGATATTTTTATAATCAATTTATAACTGCAGATGAGGAAACCCAACATTTATTGAGAACTCACAATATGCCAGAAAAAATGCCATGTGCCCATTCCATGATACGAGTATATATTGTCTAATTTGATTTTAACAACTCTGCAAAGGAGAGATTATGTATTTCTGCCCCATGGTAGATGATGAAACTGCAGGTCTGAGAGATTAGGGAGCTAACCCAAGTTCACCCAGCTAATGAGTGAGCTTGGCATGGTGGAGCAGAGTTTCTAACATGAATTATATGGCTCCAAAGCACATCATCTTAACTGTTCCTGAATATCTGACAGGTGGGATATAGGGGAGGGTAATGAGTTGACTAATGGCACACAGAGCACAGAGGACAGAGCTGGAACTTGAACCTAGGTCTCCTGACTCCCAATCTTGGGTCTTCATCTCTTAATAGTAACAGCTTTTGCTTGCACCATAACCTGGTGCTCCCGGGTAAAGGGTCCCTGGGGAGAAGATGAAGAGGCTTATTCTGGGGCGTGCATATTGATTGTTGGGGTTGGAGAGCTGCTCAAGGGAGCAAGGGACCTGCCCCAGCTCTGTCCCCTTCTCTGGCTAG
Seq C2 exon
GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCCGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGTGTCTTCAGCTTTGACAGCCATTGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228314-CYP4F3:NM_000896:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGCTCCTGCTGAGT
R:
TCCTGGCAATGGCTGTCAAAG
Band lengths:
249-2084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)