HsaINT0044529 @ hg19
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450, family 4, subfamily F, polypeptide 8 [Source:HGNC Symbol;Acc:2648]
Coordinates
chr19:15730446-15733150:+
Coord C1 exon
chr19:15730446-15730572
Coord A exon
chr19:15730573-15733028
Coord C2 exon
chr19:15733029-15733150
Length
2456 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGCTCCCTTCTCTGGCCAGGCC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGGATGGGCTCTTGTTAAGTGTTGGTGACAAGTGGAGACACCACCGTCGCTTGTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATAAAGATTTTCAGCAAGAGTGCAAACATCATGCAT
Seq A exon
GTGAGTGCCTTGAACTCAGCATCCCAGCTGCAGCCTTGGGGTGGAGGGATCACATACAATTGGGTCTGGAATGTTGGCTCTCCTGGGTGGGTTTGGGGCCATTGCTCTTCCTCTCTGTGCCTTGATTTCCCCATGAGGCTAATAATCCTCACTAAAAGGTGGTAGGAGCATGTAATGGACTCATGTCTCTGACACTTAGTAGGTGGTCAGAAGGAGTCAATTTCCACATTTTTCTCACAGAAGCCCTGTAAACTCAAGAAAGGAATGATGACACGTGCATAGTAGTCATTGCTGAGTACAGATCACTTCAAAACTAATTGGTTTAGAGCAATAAGGGTTTATATTTGCTAACAAATCTGTGGGACTGTTGGCCAGCCCTTCTGCATGTGGATAGGATCCCTCATGGTATAAGAGCAGCTGTGGGTCAGGTAGGCAGCTTTGCTTGTGCCAGCTCAGTTCTCTCACATATTTGGAGCTTTGCTGGCTTCTGGCTGATTTAGGATGGCCTCAGCTGGGACACCTGGACTTTTCTCCATGTGATTCTCTGCCTCTAGATGACACCCCAGGATTGCTCACATGGCAGAGACAGGATTCCAAGGCAGTGAGAGGAGGATACAATGCTTCTCACTAGTTATTATTATTTATTTTATTTTTGAGATGAAGTCTCGCTTTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCTCTGCAACCCCCGCCTCAAGCAATTCTCCTGTCTTAGCCTCGTGGGTAGATGGAATTACAGGCGCCCACCACCATGCCCAACTAATTTTTTGTATCTTCAGTAGAGACAGGGTTTCACCATGTTGGGCAGGCTGGTCTTGAACTCCTGACGTCAAGTGATCTGCCCTCCTCGGCCTCACAAAATGCTGGAATTACAGGCATGGGCTGCTGCACCCAGTCAACTTCTCACTAGTTATGGCCTTATCATTTTCACCACATTCTATTGGCCAAAAAAAGTAAAACGTCCACCATGAATCAATGTGGGGCAAAATAGGCTCCATCTCTTAATGGAAGTTGCTAAAAAATCACATTGCAAAAGATGTGGATGCAGGGAGAAGAGAAGAAATGGAGCCAAGCGTTTTGTGAAACGACTAGGATTTTTTTTTCTCCTGTGAGCTAATAAATTAGCTTGTTACTTTTGCATGGATTCTGCCAGAAGACACGAGACTTCTGGGTCAAAGACAAAAGTTTATTACTCATGTCTCAGCAAGTGGCATGTGCATCTTGTTGGTTTGGATCCTTTCTCTAAGCCACCCAAATTCCCTGGGGTGATAAGGTGGGCTTCTATAGATGCCTGCCATGTAGTATATTTGCATGATGGGGAGGAGCATTAGGCTTAGAGAATCAGCTTTTAGAGCAAGCAGAATAAGCCTAACGTGTGTCCCAGAGGAGCCATTACCTTATACCCCAAGGCTGTTCTCTGCAAACACAATGCTGAGAAATAGCCCAGATTAAGAACCTCAGGGTTGACCGGGTGTGGTGGCTCATGCTTGTAATCCCAGCACATTGGTATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCAGGGCGTGGTGGTGCGTGCCTGTAACCCCAGCTACTCAGGAGGCTGAGACAGGAGAATTGCTTGAACCCAGCAGGCAGAGGTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCAACAGAACGAGACTCCATCTCAAAAACTAGCAAACAAACAAAACAAACAAACAACAACAACAACAAAACTTCAGAGTTTTGCATTCTTGGCATGCTCAGAAAAAAATGTTCAGGGGGATCACAGGGACTTTTTGTAATCAATTTATAACAATGAAGATGAATCAAGATAATATTTATTGAGAACTCATCATATGACAGAAATGATGTAATATGCCTATTCCATGGTGTATGTGGTCTCATTTAATTTACACCGCCTTGTGAAGTAGAGGATATTTTCCACCCTCTCCCCCATGCCATGACAAATGGTGAAACTGAGGGCCAGAGAGGTTAGAGAGATTTCCCAAGTTCACCCAGCTTGTCAGTGAGTCTAAGAGTGGGGGAAAAGGGGTTCTAGCCTGGCTCCCTGGCATCAAAGCAGGTCATCTTGATTGCTATTGAGGATTTGACAGGTGAGACCTAGAGGAGGGCTGTGAGTTGACCAAGGGTACACACAGCTTAGGAATCACAGCTGGGGCTTGAACCCAGCCATGGGATCTTCATCTCCTAATAGTAACAGCTTCCACTCTCACCCAAGCGTAGTCCTCCCTGAGGATGGGGGTCTGGGACAGAAAACCAGGAGCATGCCTCTGGGGGAGTCCATCCTGGTGGTTGGGGTTGCAGGGGGACTCAGAGGAGCCAAGGCCTGGCCCCAGCCCTGCTCCCTTCTCTGGCCAG
Seq C2 exon
GCCAAGTGGCAACGCCTGGCCATGGAGGGCAGCACCTGTCTGGATGTGTTTGAGCACATCAGCCTTATGACCCTGGACAGTCTGCAGAAATGCATCTTCAGCTTTGACAGCAATTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-CYP4F8:NM_007253:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)